Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDX4O14627 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.25■□□□□ 0.99
CDX4O14627 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.25■□□□□ 0.99
CDX4O14627 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
CDX4O14627 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDX4O14627 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CDX4O14627 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDX4O14627 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDX4O14627 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDX4O14627 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDX4O14627 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.25■□□□□ 0.99
CDX4O14627 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC21.25■□□□□ 0.99
CDX4O14627 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.25■□□□□ 0.99
CDX4O14627 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CDX4O14627 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDX4O14627 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
CDX4O14627 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDX4O14627 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
CDX4O14627 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDX4O14627 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDX4O14627 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
CDX4O14627 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDX4O14627 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDX4O14627 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.24■□□□□ 0.99
CDX4O14627 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.24■□□□□ 0.99
CDX4O14627 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDX4O14627 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDX4O14627 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDX4O14627 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CDX4O14627 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CDX4O14627 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX4O14627 AC079630.1-202ENST00000618127 1840 ntBASIC21.23■□□□□ 0.99
CDX4O14627 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX4O14627 RNA5SP413-201ENST00000516373 109 ntBASIC21.23■□□□□ 0.99
CDX4O14627 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CDX4O14627 MIR4758-201ENST00000577688 71 ntBASIC21.23■□□□□ 0.99
CDX4O14627 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.23■□□□□ 0.99
CDX4O14627 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CDX4O14627 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX4O14627 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CDX4O14627 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDX4O14627 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDX4O14627 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDX4O14627 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CDX4O14627 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.22■□□□□ 0.99
CDX4O14627 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.22■□□□□ 0.99
CDX4O14627 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.22■□□□□ 0.99
CDX4O14627 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.22■□□□□ 0.99
CDX4O14627 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.22■□□□□ 0.99
CDX4O14627 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDX4O14627 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.22■□□□□ 0.99
CDX4O14627 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDX4O14627 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDX4O14627 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDX4O14627 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CDX4O14627 RPS2P52-201ENST00000469610 820 ntBASIC21.21■□□□□ 0.99
CDX4O14627 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.21■□□□□ 0.99
CDX4O14627 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.21■□□□□ 0.99
CDX4O14627 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDX4O14627 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
CDX4O14627 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDX4O14627 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDX4O14627 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDX4O14627 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDX4O14627 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CDX4O14627 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.2■□□□□ 0.98
CDX4O14627 AC010536.3-201ENST00000620306 533 ntBASIC21.2■□□□□ 0.98
CDX4O14627 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.2■□□□□ 0.98
CDX4O14627 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDX4O14627 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.2■□□□□ 0.98
CDX4O14627 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CDX4O14627 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CDX4O14627 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.2■□□□□ 0.98
CDX4O14627 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX4O14627 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.19■□□□□ 0.98
CDX4O14627 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.19■□□□□ 0.98
CDX4O14627 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX4O14627 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX4O14627 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.19■□□□□ 0.98
CDX4O14627 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX4O14627 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX4O14627 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.19■□□□□ 0.98
CDX4O14627 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
CDX4O14627 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
CDX4O14627 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDX4O14627 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDX4O14627 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDX4O14627 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.18■□□□□ 0.98
CDX4O14627 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.18■□□□□ 0.98
CDX4O14627 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDX4O14627 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDX4O14627 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDX4O14627 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDX4O14627 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDX4O14627 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDX4O14627 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDX4O14627 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDX4O14627 MIPEPP3-201ENST00000412105 444 ntBASIC21.17■□□□□ 0.98
CDX4O14627 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.17■□□□□ 0.98
CDX4O14627 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms