Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC30.17■■■□□ 2.42
CCDC61Q9Y6R9 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC30.17■■■□□ 2.42
CCDC61Q9Y6R9 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC61Q9Y6R9 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC61Q9Y6R9 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC61Q9Y6R9 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC30.16■■■□□ 2.42
CCDC61Q9Y6R9 MAP2K4P1-201ENST00000438453 1195 ntBASIC30.16■■■□□ 2.42
CCDC61Q9Y6R9 AC079140.4-201ENST00000507448 529 ntBASIC30.16■■■□□ 2.42
CCDC61Q9Y6R9 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC30.16■■■□□ 2.42
CCDC61Q9Y6R9 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC30.16■■■□□ 2.42
CCDC61Q9Y6R9 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC61Q9Y6R9 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC61Q9Y6R9 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC61Q9Y6R9 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC61Q9Y6R9 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC61Q9Y6R9 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC30.15■■■□□ 2.42
CCDC61Q9Y6R9 CROCCP5-201ENST00000436658 830 ntBASIC30.15■■■□□ 2.42
CCDC61Q9Y6R9 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC30.15■■■□□ 2.42
CCDC61Q9Y6R9 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC30.15■■■□□ 2.42
CCDC61Q9Y6R9 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC61Q9Y6R9 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC61Q9Y6R9 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC61Q9Y6R9 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC30.14■■■□□ 2.42
CCDC61Q9Y6R9 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC30.14■■■□□ 2.42
CCDC61Q9Y6R9 ESRRAP2-201ENST00000418437 1549 ntBASIC30.14■■■□□ 2.42
CCDC61Q9Y6R9 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC30.14■■■□□ 2.42
CCDC61Q9Y6R9 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC30.14■■■□□ 2.42
CCDC61Q9Y6R9 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC30.13■■■□□ 2.41
CCDC61Q9Y6R9 METTL26-203ENST00000397664 604 ntTSL 2 BASIC30.13■■■□□ 2.41
CCDC61Q9Y6R9 KRT18P11-201ENST00000435214 1283 ntBASIC30.13■■■□□ 2.41
CCDC61Q9Y6R9 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC30.13■■■□□ 2.41
CCDC61Q9Y6R9 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC30.13■■■□□ 2.41
CCDC61Q9Y6R9 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CCDC61Q9Y6R9 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC61Q9Y6R9 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC61Q9Y6R9 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC30.12■■■□□ 2.41
CCDC61Q9Y6R9 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC61Q9Y6R9 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC30.12■■■□□ 2.41
CCDC61Q9Y6R9 EMC9-206ENST00000560403 872 ntTSL 2 BASIC30.12■■■□□ 2.41
CCDC61Q9Y6R9 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC61Q9Y6R9 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC30.12■■■□□ 2.41
CCDC61Q9Y6R9 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC30.11■■■□□ 2.41
CCDC61Q9Y6R9 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC61Q9Y6R9 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
CCDC61Q9Y6R9 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC61Q9Y6R9 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC61Q9Y6R9 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC30.11■■■□□ 2.41
CCDC61Q9Y6R9 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC61Q9Y6R9 AC011767.1-201ENST00000617410 1153 ntBASIC30.11■■■□□ 2.41
CCDC61Q9Y6R9 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC30.11■■■□□ 2.41
CCDC61Q9Y6R9 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC61Q9Y6R9 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
CCDC61Q9Y6R9 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC30.1■■■□□ 2.41
CCDC61Q9Y6R9 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC30.1■■■□□ 2.41
CCDC61Q9Y6R9 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC30.1■■■□□ 2.41
CCDC61Q9Y6R9 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC61Q9Y6R9 AC104771.1-201ENST00000603335 964 ntBASIC30.1■■■□□ 2.41
CCDC61Q9Y6R9 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC30.1■■■□□ 2.41
CCDC61Q9Y6R9 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC61Q9Y6R9 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC61Q9Y6R9 AC005224.4-201ENST00000583262 1652 ntBASIC30.1■■■□□ 2.41
CCDC61Q9Y6R9 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC61Q9Y6R9 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC61Q9Y6R9 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC61Q9Y6R9 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC61Q9Y6R9 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC61Q9Y6R9 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC61Q9Y6R9 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC61Q9Y6R9 PREB-202ENST00000406567 1910 ntTSL 5 BASIC30.09■■■□□ 2.41
CCDC61Q9Y6R9 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC61Q9Y6R9 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC30.09■■■□□ 2.41
CCDC61Q9Y6R9 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC61Q9Y6R9 SPI1-203ENST00000533030 661 ntTSL 2 BASIC30.09■■■□□ 2.41
CCDC61Q9Y6R9 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC30.08■■■□□ 2.41
CCDC61Q9Y6R9 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC30.08■■■□□ 2.41
CCDC61Q9Y6R9 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
CCDC61Q9Y6R9 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC30.08■■■□□ 2.41
CCDC61Q9Y6R9 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
CCDC61Q9Y6R9 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC61Q9Y6R9 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC61Q9Y6R9 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC61Q9Y6R9 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC61Q9Y6R9 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC30.07■■■□□ 2.4
CCDC61Q9Y6R9 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC61Q9Y6R9 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC61Q9Y6R9 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC30.07■■■□□ 2.4
CCDC61Q9Y6R9 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC30.06■■■□□ 2.4
CCDC61Q9Y6R9 AC009237.3-201ENST00000393279 1427 ntBASIC30.06■■■□□ 2.4
CCDC61Q9Y6R9 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
CCDC61Q9Y6R9 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC30.06■■■□□ 2.4
CCDC61Q9Y6R9 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC30.05■■■□□ 2.4
CCDC61Q9Y6R9 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
CCDC61Q9Y6R9 NCF1B-203ENST00000435988 1254 ntBASIC30.05■■■□□ 2.4
CCDC61Q9Y6R9 AC006970.2-201ENST00000450065 779 ntBASIC30.05■■■□□ 2.4
CCDC61Q9Y6R9 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC30.05■■■□□ 2.4
CCDC61Q9Y6R9 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC61Q9Y6R9 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC30.05■■■□□ 2.4
CCDC61Q9Y6R9 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC61Q9Y6R9 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC61Q9Y6R9 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC30.04■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms