Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN3Q9H347 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBQLN3Q9H347 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
UBQLN3Q9H347 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
UBQLN3Q9H347 AC242852.2-201ENST00000615738 1807 ntBASIC20.19■□□□□ 0.82
UBQLN3Q9H347 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
UBQLN3Q9H347 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.19■□□□□ 0.82
UBQLN3Q9H347 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBQLN3Q9H347 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.19■□□□□ 0.82
UBQLN3Q9H347 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
UBQLN3Q9H347 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBQLN3Q9H347 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.19■□□□□ 0.82
UBQLN3Q9H347 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.19■□□□□ 0.82
UBQLN3Q9H347 AC233992.3-201ENST00000607491 485 ntBASIC20.19■□□□□ 0.82
UBQLN3Q9H347 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBQLN3Q9H347 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.19■□□□□ 0.82
UBQLN3Q9H347 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
UBQLN3Q9H347 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBQLN3Q9H347 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
UBQLN3Q9H347 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
UBQLN3Q9H347 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBQLN3Q9H347 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.18■□□□□ 0.82
UBQLN3Q9H347 AC008764.7-201ENST00000593779 1081 ntBASIC20.18■□□□□ 0.82
UBQLN3Q9H347 CA15P2-201ENST00000611168 834 ntBASIC20.18■□□□□ 0.82
UBQLN3Q9H347 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBQLN3Q9H347 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
UBQLN3Q9H347 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBQLN3Q9H347 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBQLN3Q9H347 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.18■□□□□ 0.82
UBQLN3Q9H347 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.18■□□□□ 0.82
UBQLN3Q9H347 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
UBQLN3Q9H347 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBQLN3Q9H347 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.17■□□□□ 0.82
UBQLN3Q9H347 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
UBQLN3Q9H347 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBQLN3Q9H347 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.17■□□□□ 0.82
UBQLN3Q9H347 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBQLN3Q9H347 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.17■□□□□ 0.82
UBQLN3Q9H347 AC099791.1-201ENST00000416440 715 ntBASIC20.17■□□□□ 0.82
UBQLN3Q9H347 ZNRF2P3-201ENST00000424200 374 ntBASIC20.17■□□□□ 0.82
UBQLN3Q9H347 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
UBQLN3Q9H347 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
UBQLN3Q9H347 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
UBQLN3Q9H347 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
UBQLN3Q9H347 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBQLN3Q9H347 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
UBQLN3Q9H347 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBQLN3Q9H347 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 AC105265.2-201ENST00000467189 838 ntBASIC20.16■□□□□ 0.82
UBQLN3Q9H347 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN3Q9H347 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 SLC47A1P1-202ENST00000449666 945 ntBASIC20.15■□□□□ 0.82
UBQLN3Q9H347 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms