Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.82■■□□□ 1.4
LRCH3Q96II8 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
LRCH3Q96II8 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
LRCH3Q96II8 CNN2P6-201ENST00000439038 900 ntBASIC23.82■■□□□ 1.4
LRCH3Q96II8 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
LRCH3Q96II8 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
LRCH3Q96II8 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC23.82■■□□□ 1.4
LRCH3Q96II8 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
LRCH3Q96II8 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
LRCH3Q96II8 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC23.82■■□□□ 1.4
LRCH3Q96II8 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
LRCH3Q96II8 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
LRCH3Q96II8 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
LRCH3Q96II8 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC23.81■■□□□ 1.4
LRCH3Q96II8 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
LRCH3Q96II8 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC23.81■■□□□ 1.4
LRCH3Q96II8 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
LRCH3Q96II8 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
LRCH3Q96II8 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC23.81■■□□□ 1.4
LRCH3Q96II8 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC23.81■■□□□ 1.4
LRCH3Q96II8 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC23.81■■□□□ 1.4
LRCH3Q96II8 KRT18P21-201ENST00000515767 1272 ntBASIC23.81■■□□□ 1.4
LRCH3Q96II8 BRI3-207ENST00000539286 699 ntTSL 2 BASIC23.81■■□□□ 1.4
LRCH3Q96II8 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
LRCH3Q96II8 AC104187.1-201ENST00000607510 612 ntBASIC23.81■■□□□ 1.4
LRCH3Q96II8 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
LRCH3Q96II8 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
LRCH3Q96II8 ERN1-208ENST00000606895 2068 ntBASIC23.8■■□□□ 1.4
LRCH3Q96II8 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
LRCH3Q96II8 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC23.8■■□□□ 1.4
LRCH3Q96II8 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.8■■□□□ 1.4
LRCH3Q96II8 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
LRCH3Q96II8 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
LRCH3Q96II8 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
LRCH3Q96II8 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.8■■□□□ 1.4
LRCH3Q96II8 MIPEPP3-201ENST00000412105 444 ntBASIC23.8■■□□□ 1.4
LRCH3Q96II8 GXYLT1P3-201ENST00000453058 1193 ntBASIC23.8■■□□□ 1.4
LRCH3Q96II8 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC23.8■■□□□ 1.4
LRCH3Q96II8 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
LRCH3Q96II8 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
LRCH3Q96II8 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
LRCH3Q96II8 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
LRCH3Q96II8 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
LRCH3Q96II8 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
LRCH3Q96II8 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC23.79■■□□□ 1.4
LRCH3Q96II8 APTR-203ENST00000430801 583 ntTSL 5 BASIC23.79■■□□□ 1.4
LRCH3Q96II8 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
LRCH3Q96II8 MMD2-204ENST00000612910 778 ntTSL 5 BASIC23.79■■□□□ 1.4
LRCH3Q96II8 CPT2-209ENST00000636935 803 ntTSL 5 BASIC23.79■■□□□ 1.4
LRCH3Q96II8 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
LRCH3Q96II8 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
LRCH3Q96II8 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
LRCH3Q96II8 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
LRCH3Q96II8 STX4-202ENST00000394998 1498 ntTSL 2 BASIC23.79■■□□□ 1.4
LRCH3Q96II8 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LRCH3Q96II8 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
LRCH3Q96II8 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC23.78■■□□□ 1.4
LRCH3Q96II8 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
LRCH3Q96II8 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LRCH3Q96II8 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
LRCH3Q96II8 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
LRCH3Q96II8 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC23.77■■□□□ 1.4
LRCH3Q96II8 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
LRCH3Q96II8 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
LRCH3Q96II8 PEX7-202ENST00000367756 680 ntTSL 3 BASIC23.77■■□□□ 1.4
LRCH3Q96II8 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC23.77■■□□□ 1.4
LRCH3Q96II8 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC23.77■■□□□ 1.4
LRCH3Q96II8 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
LRCH3Q96II8 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.77■■□□□ 1.4
LRCH3Q96II8 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
LRCH3Q96II8 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
LRCH3Q96II8 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
LRCH3Q96II8 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LRCH3Q96II8 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.76■■□□□ 1.39
LRCH3Q96II8 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC23.76■■□□□ 1.39
LRCH3Q96II8 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC23.76■■□□□ 1.39
LRCH3Q96II8 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC23.76■■□□□ 1.39
LRCH3Q96II8 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
LRCH3Q96II8 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC23.76■■□□□ 1.39
LRCH3Q96II8 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
LRCH3Q96II8 MYCNOS-205ENST00000641950 531 ntBASIC23.76■■□□□ 1.39
LRCH3Q96II8 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
LRCH3Q96II8 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LRCH3Q96II8 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
LRCH3Q96II8 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
LRCH3Q96II8 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC23.75■■□□□ 1.39
LRCH3Q96II8 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC23.75■■□□□ 1.39
LRCH3Q96II8 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.75■■□□□ 1.39
LRCH3Q96II8 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
LRCH3Q96II8 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
LRCH3Q96II8 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC23.75■■□□□ 1.39
LRCH3Q96II8 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LRCH3Q96II8 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC23.75■■□□□ 1.39
LRCH3Q96II8 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC23.75■■□□□ 1.39
LRCH3Q96II8 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LRCH3Q96II8 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LRCH3Q96II8 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
LRCH3Q96II8 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.74■■□□□ 1.39
LRCH3Q96II8 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC23.74■■□□□ 1.39
LRCH3Q96II8 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms