Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 OR2I1P-207ENST00000453522 948 ntBASIC19.25■□□□□ 0.67
SKA3Q8IX90 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.25■□□□□ 0.67
SKA3Q8IX90 AC010525.1-201ENST00000585559 441 ntBASIC19.25■□□□□ 0.67
SKA3Q8IX90 AC106739.1-201ENST00000617035 715 ntBASIC19.25■□□□□ 0.67
SKA3Q8IX90 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.25■□□□□ 0.67
SKA3Q8IX90 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.25■□□□□ 0.67
SKA3Q8IX90 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SKA3Q8IX90 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SKA3Q8IX90 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SKA3Q8IX90 LINC01960-201ENST00000563759 1884 ntBASIC19.24■□□□□ 0.67
SKA3Q8IX90 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA3Q8IX90 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA3Q8IX90 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA3Q8IX90 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.24■□□□□ 0.67
SKA3Q8IX90 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA3Q8IX90 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA3Q8IX90 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.24■□□□□ 0.67
SKA3Q8IX90 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
SKA3Q8IX90 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA3Q8IX90 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.24■□□□□ 0.67
SKA3Q8IX90 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SKA3Q8IX90 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SKA3Q8IX90 AC087742.1-201ENST00000575880 1738 ntBASIC19.23■□□□□ 0.67
SKA3Q8IX90 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.23■□□□□ 0.67
SKA3Q8IX90 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA3Q8IX90 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SKA3Q8IX90 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.23■□□□□ 0.67
SKA3Q8IX90 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SKA3Q8IX90 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.23■□□□□ 0.67
SKA3Q8IX90 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SKA3Q8IX90 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.23■□□□□ 0.67
SKA3Q8IX90 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.23■□□□□ 0.67
SKA3Q8IX90 AL139246.5-201ENST00000606645 996 ntBASIC19.23■□□□□ 0.67
SKA3Q8IX90 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.23■□□□□ 0.67
SKA3Q8IX90 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.23■□□□□ 0.67
SKA3Q8IX90 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA3Q8IX90 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.23■□□□□ 0.67
SKA3Q8IX90 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA3Q8IX90 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA3Q8IX90 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA3Q8IX90 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA3Q8IX90 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
SKA3Q8IX90 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA3Q8IX90 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SKA3Q8IX90 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SKA3Q8IX90 ESRRAP2-201ENST00000418437 1549 ntBASIC19.22■□□□□ 0.67
SKA3Q8IX90 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.22■□□□□ 0.67
SKA3Q8IX90 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SKA3Q8IX90 SLC47A1P1-202ENST00000449666 945 ntBASIC19.22■□□□□ 0.67
SKA3Q8IX90 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.22■□□□□ 0.67
SKA3Q8IX90 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SKA3Q8IX90 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SKA3Q8IX90 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC19.22■□□□□ 0.67
SKA3Q8IX90 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SKA3Q8IX90 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.21■□□□□ 0.67
SKA3Q8IX90 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.21■□□□□ 0.67
SKA3Q8IX90 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.21■□□□□ 0.67
SKA3Q8IX90 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.21■□□□□ 0.67
SKA3Q8IX90 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.21■□□□□ 0.67
SKA3Q8IX90 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.21■□□□□ 0.67
SKA3Q8IX90 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SKA3Q8IX90 AC233723.2-201ENST00000623798 2106 ntBASIC19.21■□□□□ 0.67
SKA3Q8IX90 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SKA3Q8IX90 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA3Q8IX90 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SKA3Q8IX90 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SKA3Q8IX90 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SKA3Q8IX90 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SKA3Q8IX90 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA3Q8IX90 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SKA3Q8IX90 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA3Q8IX90 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SKA3Q8IX90 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA3Q8IX90 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA3Q8IX90 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA3Q8IX90 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA3Q8IX90 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA3Q8IX90 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.19■□□□□ 0.66
SKA3Q8IX90 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SKA3Q8IX90 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SKA3Q8IX90 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA3Q8IX90 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SKA3Q8IX90 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA3Q8IX90 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms