Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CCDC60Q8IWA6 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC24.4■■□□□ 1.5
CCDC60Q8IWA6 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC24.4■■□□□ 1.5
CCDC60Q8IWA6 LINC02228-203ENST00000641970 1355 ntBASIC24.4■■□□□ 1.5
CCDC60Q8IWA6 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC24.39■■□□□ 1.5
CCDC60Q8IWA6 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
CCDC60Q8IWA6 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 KRT18P5-201ENST00000436075 1291 ntBASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 TPRG1LP1-201ENST00000598702 760 ntBASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
CCDC60Q8IWA6 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC60Q8IWA6 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC60Q8IWA6 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC60Q8IWA6 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC60Q8IWA6 KRT18P14-201ENST00000534205 1250 ntBASIC24.38■■□□□ 1.49
CCDC60Q8IWA6 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC24.38■■□□□ 1.49
CCDC60Q8IWA6 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC60Q8IWA6 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC60Q8IWA6 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC60Q8IWA6 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC60Q8IWA6 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CCDC60Q8IWA6 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CCDC60Q8IWA6 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CCDC60Q8IWA6 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC24.37■■□□□ 1.49
CCDC60Q8IWA6 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CCDC60Q8IWA6 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC24.36■■□□□ 1.49
CCDC60Q8IWA6 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC24.36■■□□□ 1.49
CCDC60Q8IWA6 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
CCDC60Q8IWA6 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
CCDC60Q8IWA6 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CCDC60Q8IWA6 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC24.36■■□□□ 1.49
CCDC60Q8IWA6 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CCDC60Q8IWA6 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
CCDC60Q8IWA6 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC24.36■■□□□ 1.49
CCDC60Q8IWA6 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC24.36■■□□□ 1.49
CCDC60Q8IWA6 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
CCDC60Q8IWA6 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC60Q8IWA6 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC24.35■■□□□ 1.49
CCDC60Q8IWA6 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC24.35■■□□□ 1.49
CCDC60Q8IWA6 BX005040.4-201ENST00000637145 1518 ntBASIC24.35■■□□□ 1.49
CCDC60Q8IWA6 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC60Q8IWA6 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
CCDC60Q8IWA6 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC60Q8IWA6 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
CCDC60Q8IWA6 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
CCDC60Q8IWA6 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC60Q8IWA6 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC60Q8IWA6 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC60Q8IWA6 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC60Q8IWA6 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC24.34■■□□□ 1.49
CCDC60Q8IWA6 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC60Q8IWA6 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC60Q8IWA6 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC60Q8IWA6 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC24.34■■□□□ 1.49
CCDC60Q8IWA6 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC60Q8IWA6 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC60Q8IWA6 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC60Q8IWA6 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC60Q8IWA6 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC60Q8IWA6 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CCDC60Q8IWA6 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
CCDC60Q8IWA6 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC24.33■■□□□ 1.49
CCDC60Q8IWA6 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
CCDC60Q8IWA6 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
CCDC60Q8IWA6 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC24.33■■□□□ 1.49
CCDC60Q8IWA6 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CCDC60Q8IWA6 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC24.33■■□□□ 1.49
CCDC60Q8IWA6 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CCDC60Q8IWA6 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CCDC60Q8IWA6 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC24.33■■□□□ 1.49
CCDC60Q8IWA6 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC24.33■■□□□ 1.49
CCDC60Q8IWA6 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CCDC60Q8IWA6 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CCDC60Q8IWA6 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
CCDC60Q8IWA6 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
CCDC60Q8IWA6 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC24.32■■□□□ 1.48
CCDC60Q8IWA6 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
CCDC60Q8IWA6 GCA-201ENST00000233612 1694 ntTSL 2 BASIC24.32■■□□□ 1.48
CCDC60Q8IWA6 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC24.32■■□□□ 1.48
CCDC60Q8IWA6 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC24.32■■□□□ 1.48
CCDC60Q8IWA6 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC24.32■■□□□ 1.48
CCDC60Q8IWA6 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC60Q8IWA6 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC24.32■■□□□ 1.48
CCDC60Q8IWA6 GLI3-203ENST00000437480 451 ntTSL 2 BASIC24.32■■□□□ 1.48
CCDC60Q8IWA6 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC24.32■■□□□ 1.48
CCDC60Q8IWA6 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC24.32■■□□□ 1.48
CCDC60Q8IWA6 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms