Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
NIPAL3Q6P499 LINC01529-204ENST00000636474 1715 ntBASIC19.84■□□□□ 0.77
NIPAL3Q6P499 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NIPAL3Q6P499 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.84■□□□□ 0.77
NIPAL3Q6P499 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NIPAL3Q6P499 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.84■□□□□ 0.77
NIPAL3Q6P499 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NIPAL3Q6P499 FP325331.1-202ENST00000623531 1380 ntBASIC19.83■□□□□ 0.77
NIPAL3Q6P499 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.83■□□□□ 0.77
NIPAL3Q6P499 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NIPAL3Q6P499 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
NIPAL3Q6P499 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
NIPAL3Q6P499 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NIPAL3Q6P499 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
NIPAL3Q6P499 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.83■□□□□ 0.77
NIPAL3Q6P499 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NIPAL3Q6P499 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.83■□□□□ 0.77
NIPAL3Q6P499 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.83■□□□□ 0.76
NIPAL3Q6P499 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
NIPAL3Q6P499 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NIPAL3Q6P499 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
NIPAL3Q6P499 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NIPAL3Q6P499 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
NIPAL3Q6P499 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NIPAL3Q6P499 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.82■□□□□ 0.76
NIPAL3Q6P499 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.82■□□□□ 0.76
NIPAL3Q6P499 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.82■□□□□ 0.76
NIPAL3Q6P499 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
NIPAL3Q6P499 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.82■□□□□ 0.76
NIPAL3Q6P499 AC008406.3-201ENST00000620001 1374 ntBASIC19.82■□□□□ 0.76
NIPAL3Q6P499 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NIPAL3Q6P499 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
NIPAL3Q6P499 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
NIPAL3Q6P499 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NIPAL3Q6P499 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
NIPAL3Q6P499 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NIPAL3Q6P499 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NIPAL3Q6P499 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.81■□□□□ 0.76
NIPAL3Q6P499 AL136116.3-201ENST00000402907 1138 ntBASIC19.81■□□□□ 0.76
NIPAL3Q6P499 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
NIPAL3Q6P499 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NIPAL3Q6P499 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.81■□□□□ 0.76
NIPAL3Q6P499 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NIPAL3Q6P499 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NIPAL3Q6P499 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NIPAL3Q6P499 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NIPAL3Q6P499 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NIPAL3Q6P499 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NIPAL3Q6P499 AC099791.2-201ENST00000605725 427 ntBASIC19.8■□□□□ 0.76
NIPAL3Q6P499 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.8■□□□□ 0.76
NIPAL3Q6P499 AC009086.3-201ENST00000623486 1008 ntBASIC19.8■□□□□ 0.76
NIPAL3Q6P499 AC241377.3-202ENST00000626088 1088 ntBASIC19.8■□□□□ 0.76
NIPAL3Q6P499 AC241585.3-202ENST00000628937 1088 ntBASIC19.8■□□□□ 0.76
NIPAL3Q6P499 AC245100.8-202ENST00000629247 1058 ntBASIC19.8■□□□□ 0.76
NIPAL3Q6P499 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.8■□□□□ 0.76
NIPAL3Q6P499 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
NIPAL3Q6P499 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NIPAL3Q6P499 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NIPAL3Q6P499 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NIPAL3Q6P499 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NIPAL3Q6P499 DUX4L4-201ENST00000566884 1269 ntBASIC19.79■□□□□ 0.76
NIPAL3Q6P499 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
NIPAL3Q6P499 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.79■□□□□ 0.76
NIPAL3Q6P499 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NIPAL3Q6P499 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NIPAL3Q6P499 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NIPAL3Q6P499 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.78■□□□□ 0.76
NIPAL3Q6P499 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
NIPAL3Q6P499 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NIPAL3Q6P499 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.78■□□□□ 0.76
NIPAL3Q6P499 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NIPAL3Q6P499 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NIPAL3Q6P499 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NIPAL3Q6P499 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
NIPAL3Q6P499 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
NIPAL3Q6P499 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NIPAL3Q6P499 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NIPAL3Q6P499 FBXW4P1-201ENST00000426721 2239 ntBASIC19.78■□□□□ 0.76
NIPAL3Q6P499 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
NIPAL3Q6P499 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NIPAL3Q6P499 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.77■□□□□ 0.76
NIPAL3Q6P499 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
NIPAL3Q6P499 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NIPAL3Q6P499 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NIPAL3Q6P499 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NIPAL3Q6P499 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NIPAL3Q6P499 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
NIPAL3Q6P499 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NIPAL3Q6P499 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
NIPAL3Q6P499 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NIPAL3Q6P499 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.77■□□□□ 0.76
NIPAL3Q6P499 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NIPAL3Q6P499 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
NIPAL3Q6P499 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
NIPAL3Q6P499 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NIPAL3Q6P499 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NIPAL3Q6P499 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.76■□□□□ 0.75
NIPAL3Q6P499 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
NIPAL3Q6P499 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NIPAL3Q6P499 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms