Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
KRT40Q6A162 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
KRT40Q6A162 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC25.3■■□□□ 1.64
KRT40Q6A162 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
KRT40Q6A162 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
KRT40Q6A162 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
KRT40Q6A162 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
KRT40Q6A162 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
KRT40Q6A162 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
KRT40Q6A162 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC25.29■■□□□ 1.64
KRT40Q6A162 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
KRT40Q6A162 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC25.29■■□□□ 1.64
KRT40Q6A162 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
KRT40Q6A162 SERBP1P1-201ENST00000396021 1160 ntBASIC25.29■■□□□ 1.64
KRT40Q6A162 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC25.29■■□□□ 1.64
KRT40Q6A162 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC25.29■■□□□ 1.64
KRT40Q6A162 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC25.29■■□□□ 1.64
KRT40Q6A162 AC024257.2-201ENST00000549699 147 ntBASIC25.29■■□□□ 1.64
KRT40Q6A162 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
KRT40Q6A162 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
KRT40Q6A162 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
KRT40Q6A162 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
KRT40Q6A162 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
KRT40Q6A162 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
KRT40Q6A162 PTCHD3P2-201ENST00000424937 1205 ntBASIC25.28■■□□□ 1.64
KRT40Q6A162 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
KRT40Q6A162 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC25.28■■□□□ 1.64
KRT40Q6A162 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
KRT40Q6A162 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
KRT40Q6A162 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
KRT40Q6A162 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC25.28■■□□□ 1.64
KRT40Q6A162 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
KRT40Q6A162 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
KRT40Q6A162 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC25.28■■□□□ 1.64
KRT40Q6A162 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC25.28■■□□□ 1.64
KRT40Q6A162 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC25.28■■□□□ 1.64
KRT40Q6A162 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
KRT40Q6A162 AC137767.1-201ENST00000602918 1920 ntBASIC25.27■■□□□ 1.64
KRT40Q6A162 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
KRT40Q6A162 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
KRT40Q6A162 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
KRT40Q6A162 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
KRT40Q6A162 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
KRT40Q6A162 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
KRT40Q6A162 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
KRT40Q6A162 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC25.27■■□□□ 1.64
KRT40Q6A162 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC25.27■■□□□ 1.64
KRT40Q6A162 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC25.27■■□□□ 1.64
KRT40Q6A162 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
KRT40Q6A162 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
KRT40Q6A162 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
KRT40Q6A162 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
KRT40Q6A162 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
KRT40Q6A162 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
KRT40Q6A162 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
KRT40Q6A162 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
KRT40Q6A162 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC25.26■■□□□ 1.63
KRT40Q6A162 CA15P2-201ENST00000611168 834 ntBASIC25.26■■□□□ 1.63
KRT40Q6A162 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC25.26■■□□□ 1.63
KRT40Q6A162 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC25.26■■□□□ 1.63
KRT40Q6A162 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC25.26■■□□□ 1.63
KRT40Q6A162 STX4-202ENST00000394998 1498 ntTSL 2 BASIC25.26■■□□□ 1.63
KRT40Q6A162 SYT6-210ENST00000641643 1587 ntBASIC25.26■■□□□ 1.63
KRT40Q6A162 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
KRT40Q6A162 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC25.26■■□□□ 1.63
KRT40Q6A162 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC25.26■■□□□ 1.63
KRT40Q6A162 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC25.26■■□□□ 1.63
KRT40Q6A162 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC25.26■■□□□ 1.63
KRT40Q6A162 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC25.26■■□□□ 1.63
KRT40Q6A162 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
KRT40Q6A162 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
KRT40Q6A162 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
KRT40Q6A162 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
KRT40Q6A162 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
KRT40Q6A162 HES6-206ENST00000409574 738 ntTSL 2 BASIC25.25■■□□□ 1.63
KRT40Q6A162 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC25.25■■□□□ 1.63
KRT40Q6A162 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
KRT40Q6A162 STOX2-205ENST00000513034 807 ntTSL 3 BASIC25.25■■□□□ 1.63
KRT40Q6A162 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC25.25■■□□□ 1.63
KRT40Q6A162 AL355001.2-201ENST00000620617 1191 ntBASIC25.25■■□□□ 1.63
KRT40Q6A162 AL031602.1-201ENST00000633169 911 ntBASIC25.25■■□□□ 1.63
KRT40Q6A162 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.25■■□□□ 1.63
KRT40Q6A162 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC25.25■■□□□ 1.63
KRT40Q6A162 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC25.25■■□□□ 1.63
KRT40Q6A162 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
KRT40Q6A162 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
KRT40Q6A162 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
KRT40Q6A162 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
KRT40Q6A162 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
KRT40Q6A162 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
KRT40Q6A162 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC25.24■■□□□ 1.63
KRT40Q6A162 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
KRT40Q6A162 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
KRT40Q6A162 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC25.24■■□□□ 1.63
KRT40Q6A162 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
KRT40Q6A162 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC25.24■■□□□ 1.63
KRT40Q6A162 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
KRT40Q6A162 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
KRT40Q6A162 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
KRT40Q6A162 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC25.24■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms