Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
VSX2P58304 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.88■□□□□ 0.93
VSX2P58304 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
VSX2P58304 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VSX2P58304 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
VSX2P58304 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.87■□□□□ 0.93
VSX2P58304 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VSX2P58304 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.87■□□□□ 0.93
VSX2P58304 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VSX2P58304 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.87■□□□□ 0.93
VSX2P58304 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
VSX2P58304 MIR572-201ENST00000384983 95 ntBASIC20.87■□□□□ 0.93
VSX2P58304 AC010141.3-201ENST00000456659 717 ntBASIC20.87■□□□□ 0.93
VSX2P58304 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VSX2P58304 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.87■□□□□ 0.93
VSX2P58304 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.87■□□□□ 0.93
VSX2P58304 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
VSX2P58304 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
VSX2P58304 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
VSX2P58304 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VSX2P58304 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
VSX2P58304 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VSX2P58304 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
VSX2P58304 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VSX2P58304 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VSX2P58304 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VSX2P58304 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VSX2P58304 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
VSX2P58304 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.86■□□□□ 0.93
VSX2P58304 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VSX2P58304 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
VSX2P58304 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.86■□□□□ 0.93
VSX2P58304 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
VSX2P58304 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VSX2P58304 C9orf163-202ENST00000624034 2573 ntBASIC20.86■□□□□ 0.93
VSX2P58304 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.85■□□□□ 0.93
VSX2P58304 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VSX2P58304 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VSX2P58304 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
VSX2P58304 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VSX2P58304 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VSX2P58304 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VSX2P58304 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.85■□□□□ 0.93
VSX2P58304 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.85■□□□□ 0.93
VSX2P58304 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.85■□□□□ 0.93
VSX2P58304 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.85■□□□□ 0.93
VSX2P58304 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.85■□□□□ 0.93
VSX2P58304 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VSX2P58304 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
VSX2P58304 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VSX2P58304 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VSX2P58304 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.85■□□□□ 0.93
VSX2P58304 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VSX2P58304 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VSX2P58304 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VSX2P58304 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.84■□□□□ 0.93
VSX2P58304 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
VSX2P58304 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.84■□□□□ 0.93
VSX2P58304 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.84■□□□□ 0.93
VSX2P58304 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.84■□□□□ 0.93
VSX2P58304 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.84■□□□□ 0.93
VSX2P58304 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.84■□□□□ 0.93
VSX2P58304 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.84■□□□□ 0.93
VSX2P58304 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VSX2P58304 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VSX2P58304 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
VSX2P58304 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
VSX2P58304 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.84■□□□□ 0.93
VSX2P58304 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VSX2P58304 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
VSX2P58304 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
VSX2P58304 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VSX2P58304 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.83■□□□□ 0.93
VSX2P58304 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VSX2P58304 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.83■□□□□ 0.93
VSX2P58304 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.83■□□□□ 0.92
VSX2P58304 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.83■□□□□ 0.92
VSX2P58304 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VSX2P58304 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.82■□□□□ 0.92
VSX2P58304 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VSX2P58304 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
VSX2P58304 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
VSX2P58304 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.82■□□□□ 0.92
VSX2P58304 AC105233.4-201ENST00000642045 216 ntBASIC20.82■□□□□ 0.92
VSX2P58304 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.82■□□□□ 0.92
VSX2P58304 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VSX2P58304 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VSX2P58304 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VSX2P58304 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
VSX2P58304 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VSX2P58304 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VSX2P58304 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VSX2P58304 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VSX2P58304 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.81■□□□□ 0.92
VSX2P58304 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VSX2P58304 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
VSX2P58304 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.81■□□□□ 0.92
VSX2P58304 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.81■□□□□ 0.92
VSX2P58304 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.81■□□□□ 0.92
VSX2P58304 AC012414.1-201ENST00000556676 535 ntBASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms