Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL28P46779 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC14.34□□□□□ -0.11
RPL28P46779 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC14.34□□□□□ -0.11
RPL28P46779 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL28P46779 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL28P46779 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RPL28P46779 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL28P46779 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC14.34□□□□□ -0.11
RPL28P46779 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
RPL28P46779 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL28P46779 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RPL28P46779 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL28P46779 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL28P46779 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL28P46779 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC14.34□□□□□ -0.11
RPL28P46779 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
RPL28P46779 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL28P46779 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RPL28P46779 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL28P46779 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.11
RPL28P46779 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RPL28P46779 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RPL28P46779 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC14.33□□□□□ -0.11
RPL28P46779 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
RPL28P46779 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC14.33□□□□□ -0.11
RPL28P46779 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC14.33□□□□□ -0.12
RPL28P46779 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPL28P46779 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPL28P46779 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RPL28P46779 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RPL28P46779 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPL28P46779 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC14.33□□□□□ -0.12
RPL28P46779 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPL28P46779 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC14.33□□□□□ -0.12
RPL28P46779 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPL28P46779 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPL28P46779 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPL28P46779 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
RPL28P46779 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC14.33□□□□□ -0.12
RPL28P46779 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPL28P46779 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPL28P46779 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC14.32□□□□□ -0.12
RPL28P46779 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RPL28P46779 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPL28P46779 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC14.32□□□□□ -0.12
RPL28P46779 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
RPL28P46779 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPL28P46779 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPL28P46779 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC14.32□□□□□ -0.12
RPL28P46779 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC14.32□□□□□ -0.12
RPL28P46779 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPL28P46779 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPL28P46779 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC14.32□□□□□ -0.12
RPL28P46779 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPL28P46779 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPL28P46779 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPL28P46779 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC14.32□□□□□ -0.12
RPL28P46779 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPL28P46779 GUK1-208ENST00000366728 842 ntTSL 2 BASIC14.32□□□□□ -0.12
RPL28P46779 AC011551.1-201ENST00000614101 683 ntBASIC14.32□□□□□ -0.12
RPL28P46779 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RPL28P46779 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RPL28P46779 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
RPL28P46779 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RPL28P46779 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
RPL28P46779 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC14.32□□□□□ -0.12
RPL28P46779 AC090877.2-201ENST00000558441 1738 ntBASIC14.32□□□□□ -0.12
RPL28P46779 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPL28P46779 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC14.32□□□□□ -0.12
RPL28P46779 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
RPL28P46779 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RPL28P46779 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPL28P46779 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPL28P46779 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RPL28P46779 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPL28P46779 EI24-204ENST00000527235 1625 ntTSL 5 BASIC14.31□□□□□ -0.12
RPL28P46779 AL022069.1-201ENST00000568025 1636 ntBASIC14.31□□□□□ -0.12
RPL28P46779 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC14.31□□□□□ -0.12
RPL28P46779 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPL28P46779 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RPL28P46779 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RPL28P46779 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
RPL28P46779 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
RPL28P46779 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPL28P46779 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPL28P46779 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RPL28P46779 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPL28P46779 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPL28P46779 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPL28P46779 ALDH1A3-203ENST00000557963 1670 ntBASIC14.3□□□□□ -0.12
RPL28P46779 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RPL28P46779 AC244015.2-201ENST00000616358 1861 ntBASIC14.3□□□□□ -0.12
RPL28P46779 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RPL28P46779 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
RPL28P46779 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC14.3□□□□□ -0.12
RPL28P46779 AL033527.3-201ENST00000566366 1196 ntBASIC14.3□□□□□ -0.12
RPL28P46779 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC14.3□□□□□ -0.12
RPL28P46779 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RPL28P46779 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
RPL28P46779 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms