Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HNF4AP41235 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
HNF4AP41235 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HNF4AP41235 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HNF4AP41235 UNC93B3-201ENST00000308076 687 ntBASIC21.12■□□□□ 0.97
HNF4AP41235 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.12■□□□□ 0.97
HNF4AP41235 AC096631.2-201ENST00000436136 790 ntBASIC21.12■□□□□ 0.97
HNF4AP41235 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HNF4AP41235 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
HNF4AP41235 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
HNF4AP41235 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HNF4AP41235 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HNF4AP41235 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
HNF4AP41235 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.11■□□□□ 0.97
HNF4AP41235 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
HNF4AP41235 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HNF4AP41235 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
HNF4AP41235 DUX4L19-201ENST00000557448 1267 ntBASIC21.11■□□□□ 0.97
HNF4AP41235 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.11■□□□□ 0.97
HNF4AP41235 CA15P2-201ENST00000611168 834 ntBASIC21.11■□□□□ 0.97
HNF4AP41235 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
HNF4AP41235 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HNF4AP41235 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
HNF4AP41235 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HNF4AP41235 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
HNF4AP41235 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
HNF4AP41235 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
HNF4AP41235 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HNF4AP41235 AC139530.1-201ENST00000575312 1977 ntBASIC21.1■□□□□ 0.97
HNF4AP41235 AC080038.3-201ENST00000623346 1952 ntBASIC21.1■□□□□ 0.97
HNF4AP41235 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HNF4AP41235 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HNF4AP41235 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
HNF4AP41235 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
HNF4AP41235 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
HNF4AP41235 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HNF4AP41235 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
HNF4AP41235 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.1■□□□□ 0.97
HNF4AP41235 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HNF4AP41235 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
HNF4AP41235 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.1■□□□□ 0.97
HNF4AP41235 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HNF4AP41235 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
HNF4AP41235 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.1■□□□□ 0.97
HNF4AP41235 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HNF4AP41235 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HNF4AP41235 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HNF4AP41235 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HNF4AP41235 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HNF4AP41235 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HNF4AP41235 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
HNF4AP41235 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HNF4AP41235 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HNF4AP41235 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.09■□□□□ 0.97
HNF4AP41235 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
HNF4AP41235 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HNF4AP41235 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HNF4AP41235 AC092053.2-201ENST00000640557 1818 ntBASIC21.08■□□□□ 0.97
HNF4AP41235 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.08■□□□□ 0.97
HNF4AP41235 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HNF4AP41235 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HNF4AP41235 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.08■□□□□ 0.97
HNF4AP41235 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.08■□□□□ 0.97
HNF4AP41235 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.08■□□□□ 0.96
HNF4AP41235 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HNF4AP41235 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
HNF4AP41235 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
HNF4AP41235 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.07■□□□□ 0.96
HNF4AP41235 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HNF4AP41235 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HNF4AP41235 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HNF4AP41235 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
HNF4AP41235 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
HNF4AP41235 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.07■□□□□ 0.96
HNF4AP41235 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.07■□□□□ 0.96
HNF4AP41235 AL138724.1-201ENST00000606771 1088 ntBASIC21.07■□□□□ 0.96
HNF4AP41235 AL136162.1-201ENST00000607711 1078 ntBASIC21.07■□□□□ 0.96
HNF4AP41235 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HNF4AP41235 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.07■□□□□ 0.96
HNF4AP41235 AC137767.1-201ENST00000602918 1920 ntBASIC21.07■□□□□ 0.96
HNF4AP41235 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.07■□□□□ 0.96
HNF4AP41235 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HNF4AP41235 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HNF4AP41235 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HNF4AP41235 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HNF4AP41235 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
HNF4AP41235 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.06■□□□□ 0.96
HNF4AP41235 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
HNF4AP41235 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HNF4AP41235 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HNF4AP41235 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.06■□□□□ 0.96
HNF4AP41235 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
HNF4AP41235 AL031602.1-201ENST00000633169 911 ntBASIC21.06■□□□□ 0.96
HNF4AP41235 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HNF4AP41235 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.06■□□□□ 0.96
HNF4AP41235 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HNF4AP41235 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HNF4AP41235 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
HNF4AP41235 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HNF4AP41235 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms