Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH3P20585 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH3P20585 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.69■■□□□ 1.06
MSH3P20585 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
MSH3P20585 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH3P20585 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH3P20585 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.69■■□□□ 1.06
MSH3P20585 MIR939-201ENST00000401314 82 ntBASIC21.69■■□□□ 1.06
MSH3P20585 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH3P20585 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH3P20585 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.69■■□□□ 1.06
MSH3P20585 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH3P20585 AC068587.7-201ENST00000641602 218 ntBASIC21.69■■□□□ 1.06
MSH3P20585 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH3P20585 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH3P20585 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH3P20585 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
MSH3P20585 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.69■■□□□ 1.06
MSH3P20585 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
MSH3P20585 AC091305.1-201ENST00000479476 895 ntBASIC21.68■■□□□ 1.06
MSH3P20585 SUDS3P1-201ENST00000505831 966 ntBASIC21.68■■□□□ 1.06
MSH3P20585 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.68■■□□□ 1.06
MSH3P20585 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH3P20585 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH3P20585 AL136967.2-201ENST00000623968 743 ntBASIC21.68■■□□□ 1.06
MSH3P20585 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH3P20585 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH3P20585 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH3P20585 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH3P20585 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.68■■□□□ 1.06
MSH3P20585 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.68■■□□□ 1.06
MSH3P20585 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH3P20585 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH3P20585 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH3P20585 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH3P20585 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH3P20585 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH3P20585 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH3P20585 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH3P20585 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
MSH3P20585 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH3P20585 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH3P20585 RASA4CP-201ENST00000424092 1398 ntBASIC21.67■■□□□ 1.06
MSH3P20585 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH3P20585 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.67■■□□□ 1.06
MSH3P20585 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH3P20585 AL031602.1-201ENST00000633169 911 ntBASIC21.67■■□□□ 1.06
MSH3P20585 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH3P20585 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
MSH3P20585 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH3P20585 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH3P20585 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH3P20585 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MSH3P20585 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
MSH3P20585 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH3P20585 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH3P20585 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
MSH3P20585 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH3P20585 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
MSH3P20585 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH3P20585 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH3P20585 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.66■■□□□ 1.06
MSH3P20585 AP005435.1-201ENST00000529293 1178 ntBASIC21.66■■□□□ 1.06
MSH3P20585 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.66■■□□□ 1.06
MSH3P20585 AC087239.1-201ENST00000622671 572 ntBASIC21.66■■□□□ 1.06
MSH3P20585 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH3P20585 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH3P20585 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH3P20585 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
MSH3P20585 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.65■■□□□ 1.06
MSH3P20585 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
MSH3P20585 CA15P2-201ENST00000611168 834 ntBASIC21.65■■□□□ 1.06
MSH3P20585 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.65■■□□□ 1.06
MSH3P20585 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH3P20585 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH3P20585 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH3P20585 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH3P20585 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH3P20585 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH3P20585 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
MSH3P20585 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
MSH3P20585 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.06
MSH3P20585 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH3P20585 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
MSH3P20585 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH3P20585 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH3P20585 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
MSH3P20585 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH3P20585 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH3P20585 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSH3P20585 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH3P20585 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
MSH3P20585 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH3P20585 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH3P20585 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MSH3P20585 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH3P20585 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
MSH3P20585 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.63■■□□□ 1.05
MSH3P20585 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.63■■□□□ 1.05
MSH3P20585 ESRRAP2-201ENST00000418437 1549 ntBASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms