Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC25.8■■□□□ 1.72
HMGB1P09429 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
HMGB1P09429 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
HMGB1P09429 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC25.8■■□□□ 1.72
HMGB1P09429 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC25.8■■□□□ 1.72
HMGB1P09429 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC25.8■■□□□ 1.72
HMGB1P09429 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC25.8■■□□□ 1.72
HMGB1P09429 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
HMGB1P09429 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
HMGB1P09429 AC008406.3-201ENST00000620001 1374 ntBASIC25.8■■□□□ 1.72
HMGB1P09429 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC25.8■■□□□ 1.72
HMGB1P09429 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
HMGB1P09429 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC25.8■■□□□ 1.72
HMGB1P09429 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC25.8■■□□□ 1.72
HMGB1P09429 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
HMGB1P09429 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
HMGB1P09429 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
HMGB1P09429 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
HMGB1P09429 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC25.79■■□□□ 1.72
HMGB1P09429 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
HMGB1P09429 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
HMGB1P09429 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC25.78■■□□□ 1.72
HMGB1P09429 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC25.78■■□□□ 1.72
HMGB1P09429 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
HMGB1P09429 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
HMGB1P09429 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
HMGB1P09429 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
HMGB1P09429 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC25.78■■□□□ 1.72
HMGB1P09429 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
HMGB1P09429 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
HMGB1P09429 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC25.78■■□□□ 1.72
HMGB1P09429 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
HMGB1P09429 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
HMGB1P09429 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
HMGB1P09429 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
HMGB1P09429 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
HMGB1P09429 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC25.78■■□□□ 1.72
HMGB1P09429 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC25.78■■□□□ 1.72
HMGB1P09429 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
HMGB1P09429 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
HMGB1P09429 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
HMGB1P09429 UNC93B3-201ENST00000308076 687 ntBASIC25.77■■□□□ 1.72
HMGB1P09429 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC25.77■■□□□ 1.72
HMGB1P09429 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
HMGB1P09429 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
HMGB1P09429 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC25.77■■□□□ 1.72
HMGB1P09429 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC25.77■■□□□ 1.72
HMGB1P09429 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
HMGB1P09429 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC25.77■■□□□ 1.72
HMGB1P09429 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC25.77■■□□□ 1.72
HMGB1P09429 AC087239.1-201ENST00000622671 572 ntBASIC25.77■■□□□ 1.72
HMGB1P09429 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
HMGB1P09429 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
HMGB1P09429 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
HMGB1P09429 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
HMGB1P09429 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC25.77■■□□□ 1.72
HMGB1P09429 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC25.76■■□□□ 1.71
HMGB1P09429 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
HMGB1P09429 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC25.76■■□□□ 1.71
HMGB1P09429 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
HMGB1P09429 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC25.76■■□□□ 1.71
HMGB1P09429 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
HMGB1P09429 AC010525.1-201ENST00000585559 441 ntBASIC25.76■■□□□ 1.71
HMGB1P09429 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
HMGB1P09429 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
HMGB1P09429 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC25.76■■□□□ 1.71
HMGB1P09429 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
HMGB1P09429 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
HMGB1P09429 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC25.76■■□□□ 1.71
HMGB1P09429 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
HMGB1P09429 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC25.76■■□□□ 1.71
HMGB1P09429 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC25.75■■□□□ 1.71
HMGB1P09429 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC25.75■■□□□ 1.71
HMGB1P09429 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC25.75■■□□□ 1.71
HMGB1P09429 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
HMGB1P09429 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
HMGB1P09429 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
HMGB1P09429 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC25.75■■□□□ 1.71
HMGB1P09429 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
HMGB1P09429 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
HMGB1P09429 PTMA-205ENST00000410064 814 ntTSL 2 BASIC25.75■■□□□ 1.71
HMGB1P09429 PEMT-206ENST00000435340 960 ntTSL 5 BASIC25.75■■□□□ 1.71
HMGB1P09429 AC079089.2-201ENST00000531211 1277 ntBASIC25.75■■□□□ 1.71
HMGB1P09429 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
HMGB1P09429 STK25-234ENST00000535007 2459 ntTSL 2 BASIC25.75■■□□□ 1.71
HMGB1P09429 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
HMGB1P09429 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC25.75■■□□□ 1.71
HMGB1P09429 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
HMGB1P09429 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
HMGB1P09429 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
HMGB1P09429 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
HMGB1P09429 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC25.74■■□□□ 1.71
HMGB1P09429 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC25.74■■□□□ 1.71
HMGB1P09429 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC25.74■■□□□ 1.71
HMGB1P09429 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
HMGB1P09429 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
HMGB1P09429 SNX3-202ENST00000349379 890 ntTSL 2 BASIC25.73■■□□□ 1.71
HMGB1P09429 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC25.73■■□□□ 1.71
HMGB1P09429 AP005435.1-201ENST00000529293 1178 ntBASIC25.73■■□□□ 1.71
HMGB1P09429 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC25.73■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms