Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
COL4A1P02462 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
COL4A1P02462 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
COL4A1P02462 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC27.04■■□□□ 1.92
COL4A1P02462 AC068587.7-201ENST00000641602 218 ntBASIC27.04■■□□□ 1.92
COL4A1P02462 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
COL4A1P02462 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
COL4A1P02462 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
COL4A1P02462 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC27.03■■□□□ 1.92
COL4A1P02462 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC27.03■■□□□ 1.92
COL4A1P02462 GXYLT1P5-201ENST00000614548 1189 ntBASIC27.03■■□□□ 1.92
COL4A1P02462 ASL-203ENST00000380839 1765 ntTSL 5 BASIC27.03■■□□□ 1.92
COL4A1P02462 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC27.03■■□□□ 1.92
COL4A1P02462 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC27.03■■□□□ 1.92
COL4A1P02462 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
COL4A1P02462 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
COL4A1P02462 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC27.02■■□□□ 1.92
COL4A1P02462 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC27.02■■□□□ 1.92
COL4A1P02462 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
COL4A1P02462 ANOS2P-203ENST00000472227 1816 ntBASIC27.02■■□□□ 1.92
COL4A1P02462 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
COL4A1P02462 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
COL4A1P02462 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC27.01■■□□□ 1.92
COL4A1P02462 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
COL4A1P02462 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC27.01■■□□□ 1.91
COL4A1P02462 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
COL4A1P02462 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.91
COL4A1P02462 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC27.01■■□□□ 1.91
COL4A1P02462 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC27.01■■□□□ 1.91
COL4A1P02462 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC27.01■■□□□ 1.91
COL4A1P02462 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.91
COL4A1P02462 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC27■■□□□ 1.91
COL4A1P02462 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
COL4A1P02462 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
COL4A1P02462 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC27■■□□□ 1.91
COL4A1P02462 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC27■■□□□ 1.91
COL4A1P02462 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC27■■□□□ 1.91
COL4A1P02462 AC104771.1-201ENST00000603335 964 ntBASIC27■■□□□ 1.91
COL4A1P02462 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC27■■□□□ 1.91
COL4A1P02462 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC27■■□□□ 1.91
COL4A1P02462 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC27■■□□□ 1.91
COL4A1P02462 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC27■■□□□ 1.91
COL4A1P02462 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC27■■□□□ 1.91
COL4A1P02462 AC092068.2-201ENST00000590491 1708 ntBASIC26.99■■□□□ 1.91
COL4A1P02462 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC26.99■■□□□ 1.91
COL4A1P02462 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
COL4A1P02462 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
COL4A1P02462 MIR663A-201ENST00000385250 93 ntBASIC26.99■■□□□ 1.91
COL4A1P02462 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC26.99■■□□□ 1.91
COL4A1P02462 CPT2-209ENST00000636935 803 ntTSL 5 BASIC26.99■■□□□ 1.91
COL4A1P02462 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC26.99■■□□□ 1.91
COL4A1P02462 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
COL4A1P02462 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC26.99■■□□□ 1.91
COL4A1P02462 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
COL4A1P02462 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
COL4A1P02462 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC26.98■■□□□ 1.91
COL4A1P02462 AL050303.2-201ENST00000619798 666 ntBASIC26.98■■□□□ 1.91
COL4A1P02462 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC26.98■■□□□ 1.91
COL4A1P02462 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
COL4A1P02462 AC005224.4-201ENST00000583262 1652 ntBASIC26.98■■□□□ 1.91
COL4A1P02462 USP45-205ENST00000472914 1617 ntTSL 5 BASIC26.98■■□□□ 1.91
COL4A1P02462 MAP2K4P1-201ENST00000438453 1195 ntBASIC26.98■■□□□ 1.91
COL4A1P02462 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC26.98■■□□□ 1.91
COL4A1P02462 MFSD11-216ENST00000590393 1141 ntBASIC26.98■■□□□ 1.91
COL4A1P02462 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
COL4A1P02462 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC26.97■■□□□ 1.91
COL4A1P02462 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
COL4A1P02462 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
COL4A1P02462 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
COL4A1P02462 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
COL4A1P02462 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
COL4A1P02462 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC26.97■■□□□ 1.91
COL4A1P02462 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC26.97■■□□□ 1.91
COL4A1P02462 AC087239.1-201ENST00000622671 572 ntBASIC26.97■■□□□ 1.91
COL4A1P02462 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC26.97■■□□□ 1.91
COL4A1P02462 DUSP8P5-201ENST00000422884 1815 ntBASIC26.97■■□□□ 1.91
COL4A1P02462 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
COL4A1P02462 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
COL4A1P02462 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
COL4A1P02462 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
COL4A1P02462 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
COL4A1P02462 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
COL4A1P02462 PPP1R14BP3-201ENST00000509033 445 ntBASIC26.96■■□□□ 1.91
COL4A1P02462 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC26.96■■□□□ 1.91
COL4A1P02462 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
COL4A1P02462 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
COL4A1P02462 OXCT2P1-201ENST00000447263 1535 ntBASIC26.96■■□□□ 1.91
COL4A1P02462 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC26.96■■□□□ 1.91
COL4A1P02462 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
COL4A1P02462 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC26.95■■□□□ 1.91
COL4A1P02462 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.9
COL4A1P02462 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC26.95■■□□□ 1.9
COL4A1P02462 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC26.95■■□□□ 1.9
COL4A1P02462 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
COL4A1P02462 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
COL4A1P02462 EMC9-206ENST00000560403 872 ntTSL 2 BASIC26.95■■□□□ 1.9
COL4A1P02462 BID-214ENST00000617586 542 ntTSL 5 BASIC26.95■■□□□ 1.9
COL4A1P02462 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
COL4A1P02462 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC26.94■■□□□ 1.9
COL4A1P02462 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC26.94■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms