Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC34.42■■■■□ 3.1
PCF11O94913 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC34.42■■■■□ 3.1
PCF11O94913 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC34.42■■■■□ 3.1
PCF11O94913 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC34.42■■■■□ 3.1
PCF11O94913 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
PCF11O94913 COX20-201ENST00000366528 568 ntTSL 2 BASIC34.41■■■■□ 3.1
PCF11O94913 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC34.41■■■■□ 3.1
PCF11O94913 WWOX-218ENST00000627394 894 ntTSL 5 BASIC34.41■■■■□ 3.1
PCF11O94913 TMEM191A-211ENST00000637163 1067 ntBASIC34.41■■■■□ 3.1
PCF11O94913 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC34.41■■■■□ 3.1
PCF11O94913 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC34.41■■■■□ 3.1
PCF11O94913 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
PCF11O94913 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC34.4■■■■□ 3.1
PCF11O94913 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC34.4■■■■□ 3.1
PCF11O94913 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
PCF11O94913 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC34.4■■■■□ 3.1
PCF11O94913 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
PCF11O94913 AC137761.2-201ENST00000561729 223 ntBASIC34.4■■■■□ 3.1
PCF11O94913 AC145350.3-201ENST00000569033 163 ntBASIC34.4■■■■□ 3.1
PCF11O94913 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC34.4■■■■□ 3.1
PCF11O94913 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC34.39■■■■□ 3.1
PCF11O94913 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC34.39■■■■□ 3.1
PCF11O94913 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC34.39■■■■□ 3.1
PCF11O94913 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC34.39■■■■□ 3.1
PCF11O94913 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC34.39■■■■□ 3.1
PCF11O94913 HSCB-202ENST00000398941 955 ntTSL 2 BASIC34.39■■■■□ 3.1
PCF11O94913 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC34.39■■■■□ 3.1
PCF11O94913 AC073111.5-205ENST00000641717 521 ntBASIC34.39■■■■□ 3.1
PCF11O94913 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC34.38■■■■□ 3.09
PCF11O94913 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
PCF11O94913 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC34.38■■■■□ 3.09
PCF11O94913 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC34.38■■■■□ 3.09
PCF11O94913 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
PCF11O94913 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
PCF11O94913 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
PCF11O94913 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
PCF11O94913 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC34.37■■■■□ 3.09
PCF11O94913 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
PCF11O94913 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC34.37■■■■□ 3.09
PCF11O94913 USP45-205ENST00000472914 1617 ntTSL 5 BASIC34.37■■■■□ 3.09
PCF11O94913 OXCT2P1-201ENST00000447263 1535 ntBASIC34.37■■■■□ 3.09
PCF11O94913 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC34.37■■■■□ 3.09
PCF11O94913 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
PCF11O94913 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC34.37■■■■□ 3.09
PCF11O94913 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC34.37■■■■□ 3.09
PCF11O94913 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC34.36■■■■□ 3.09
PCF11O94913 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC34.36■■■■□ 3.09
PCF11O94913 CPT2-209ENST00000636935 803 ntTSL 5 BASIC34.36■■■■□ 3.09
PCF11O94913 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC34.36■■■■□ 3.09
PCF11O94913 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC34.36■■■■□ 3.09
PCF11O94913 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC34.36■■■■□ 3.09
PCF11O94913 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC34.36■■■■□ 3.09
PCF11O94913 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC34.35■■■■□ 3.09
PCF11O94913 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC34.35■■■■□ 3.09
PCF11O94913 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC34.35■■■■□ 3.09
PCF11O94913 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC34.35■■■■□ 3.09
PCF11O94913 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
PCF11O94913 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
PCF11O94913 AC005224.4-201ENST00000583262 1652 ntBASIC34.34■■■■□ 3.09
PCF11O94913 AC016769.1-201ENST00000409132 1010 ntBASIC34.34■■■■□ 3.09
PCF11O94913 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC34.34■■■■□ 3.09
PCF11O94913 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC34.34■■■■□ 3.09
PCF11O94913 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC34.34■■■■□ 3.09
PCF11O94913 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC34.34■■■■□ 3.09
PCF11O94913 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC34.34■■■■□ 3.09
PCF11O94913 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
PCF11O94913 LINC01960-201ENST00000563759 1884 ntBASIC34.34■■■■□ 3.09
PCF11O94913 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC34.33■■■■□ 3.09
PCF11O94913 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC34.33■■■■□ 3.09
PCF11O94913 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC34.33■■■■□ 3.09
PCF11O94913 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC34.33■■■■□ 3.09
PCF11O94913 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC34.33■■■■□ 3.09
PCF11O94913 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
PCF11O94913 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC34.32■■■■□ 3.09
PCF11O94913 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC34.32■■■■□ 3.09
PCF11O94913 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC34.32■■■■□ 3.08
PCF11O94913 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.08
PCF11O94913 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC34.32■■■■□ 3.08
PCF11O94913 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC34.32■■■■□ 3.08
PCF11O94913 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC34.31■■■■□ 3.08
PCF11O94913 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC34.31■■■■□ 3.08
PCF11O94913 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
PCF11O94913 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
PCF11O94913 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC34.31■■■■□ 3.08
PCF11O94913 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC34.31■■■■□ 3.08
PCF11O94913 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC34.31■■■■□ 3.08
PCF11O94913 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
PCF11O94913 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC34.3■■■■□ 3.08
PCF11O94913 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC34.3■■■■□ 3.08
PCF11O94913 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC34.3■■■■□ 3.08
PCF11O94913 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC34.3■■■■□ 3.08
PCF11O94913 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC34.3■■■■□ 3.08
PCF11O94913 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC34.29■■■■□ 3.08
PCF11O94913 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC34.29■■■■□ 3.08
PCF11O94913 ASL-203ENST00000380839 1765 ntTSL 5 BASIC34.29■■■■□ 3.08
PCF11O94913 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC34.29■■■■□ 3.08
PCF11O94913 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
PCF11O94913 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
PCF11O94913 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
PCF11O94913 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC34.28■■■■□ 3.08
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms