Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.43■■□□□ 1.02
SDC3O75056 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SDC3O75056 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SDC3O75056 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.43■■□□□ 1.02
SDC3O75056 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SDC3O75056 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
SDC3O75056 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
SDC3O75056 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SDC3O75056 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SDC3O75056 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
SDC3O75056 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.42■■□□□ 1.02
SDC3O75056 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.41■■□□□ 1.02
SDC3O75056 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SDC3O75056 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SDC3O75056 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SDC3O75056 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SDC3O75056 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.41■■□□□ 1.02
SDC3O75056 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SDC3O75056 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SDC3O75056 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.41■■□□□ 1.02
SDC3O75056 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.41■■□□□ 1.02
SDC3O75056 AC073111.5-205ENST00000641717 521 ntBASIC21.41■■□□□ 1.02
SDC3O75056 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
SDC3O75056 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SDC3O75056 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SDC3O75056 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SDC3O75056 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SDC3O75056 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
SDC3O75056 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.4■■□□□ 1.02
SDC3O75056 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.4■■□□□ 1.02
SDC3O75056 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SDC3O75056 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.4■■□□□ 1.02
SDC3O75056 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.4■■□□□ 1.02
SDC3O75056 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.4■■□□□ 1.02
SDC3O75056 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
SDC3O75056 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
SDC3O75056 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SDC3O75056 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
SDC3O75056 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
SDC3O75056 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SDC3O75056 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
SDC3O75056 CDCA4P2-201ENST00000441182 718 ntBASIC21.39■■□□□ 1.01
SDC3O75056 OXCT2P1-201ENST00000447263 1535 ntBASIC21.39■■□□□ 1.01
SDC3O75056 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SDC3O75056 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SDC3O75056 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SDC3O75056 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SDC3O75056 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SDC3O75056 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SDC3O75056 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SDC3O75056 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.38■■□□□ 1.01
SDC3O75056 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.38■■□□□ 1.01
SDC3O75056 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.38■■□□□ 1.01
SDC3O75056 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.38■■□□□ 1.01
SDC3O75056 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SDC3O75056 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SDC3O75056 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.37■■□□□ 1.01
SDC3O75056 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SDC3O75056 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.37■■□□□ 1.01
SDC3O75056 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.37■■□□□ 1.01
SDC3O75056 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.37■■□□□ 1.01
SDC3O75056 RAP2CP1-201ENST00000605103 478 ntBASIC21.37■■□□□ 1.01
SDC3O75056 BID-214ENST00000617586 542 ntTSL 5 BASIC21.37■■□□□ 1.01
SDC3O75056 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.37■■□□□ 1.01
SDC3O75056 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SDC3O75056 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
SDC3O75056 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.37■■□□□ 1.01
SDC3O75056 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
SDC3O75056 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SDC3O75056 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SDC3O75056 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SDC3O75056 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.36■■□□□ 1.01
SDC3O75056 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SDC3O75056 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.36■■□□□ 1.01
SDC3O75056 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.36■■□□□ 1.01
SDC3O75056 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.36■■□□□ 1.01
SDC3O75056 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.36■■□□□ 1.01
SDC3O75056 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.36■■□□□ 1.01
SDC3O75056 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SDC3O75056 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.36■■□□□ 1.01
SDC3O75056 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SDC3O75056 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.36■■□□□ 1.01
SDC3O75056 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SDC3O75056 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.35■■□□□ 1.01
SDC3O75056 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SDC3O75056 KRT19P1-201ENST00000405746 1186 ntBASIC21.35■■□□□ 1.01
SDC3O75056 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.35■■□□□ 1.01
SDC3O75056 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.35■■□□□ 1.01
SDC3O75056 AC079140.4-201ENST00000507448 529 ntBASIC21.35■■□□□ 1.01
SDC3O75056 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.35■■□□□ 1.01
SDC3O75056 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.35■■□□□ 1.01
SDC3O75056 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.35■■□□□ 1.01
SDC3O75056 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
SDC3O75056 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SDC3O75056 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.35■■□□□ 1.01
SDC3O75056 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
SDC3O75056 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.34■■□□□ 1.01
SDC3O75056 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.34■■□□□ 1.01
SDC3O75056 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SDC3O75056 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms