Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL6A5A8TX70 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A5A8TX70 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A5A8TX70 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A5A8TX70 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.27■□□□□ 0.36
COL6A5A8TX70 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.27■□□□□ 0.36
COL6A5A8TX70 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.27■□□□□ 0.36
COL6A5A8TX70 Z99916.2-201ENST00000604037 246 ntBASIC17.27■□□□□ 0.36
COL6A5A8TX70 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.27■□□□□ 0.36
COL6A5A8TX70 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
COL6A5A8TX70 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A5A8TX70 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
COL6A5A8TX70 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
COL6A5A8TX70 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A5A8TX70 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.27■□□□□ 0.35
COL6A5A8TX70 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
COL6A5A8TX70 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A5A8TX70 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.27■□□□□ 0.35
COL6A5A8TX70 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A5A8TX70 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.35
COL6A5A8TX70 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC17.27■□□□□ 0.35
COL6A5A8TX70 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A5A8TX70 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A5A8TX70 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A5A8TX70 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.26■□□□□ 0.35
COL6A5A8TX70 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A5A8TX70 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL6A5A8TX70 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A5A8TX70 BET1L-204ENST00000410108 637 ntTSL 3 BASIC17.26■□□□□ 0.35
COL6A5A8TX70 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
COL6A5A8TX70 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A5A8TX70 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A5A8TX70 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A5A8TX70 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC17.26■□□□□ 0.35
COL6A5A8TX70 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A5A8TX70 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.25■□□□□ 0.35
COL6A5A8TX70 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.25■□□□□ 0.35
COL6A5A8TX70 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
COL6A5A8TX70 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A5A8TX70 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A5A8TX70 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A5A8TX70 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC17.25■□□□□ 0.35
COL6A5A8TX70 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A5A8TX70 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.25■□□□□ 0.35
COL6A5A8TX70 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.25■□□□□ 0.35
COL6A5A8TX70 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A5A8TX70 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A5A8TX70 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A5A8TX70 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.25■□□□□ 0.35
COL6A5A8TX70 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A5A8TX70 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A5A8TX70 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A5A8TX70 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A5A8TX70 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.24■□□□□ 0.35
COL6A5A8TX70 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
COL6A5A8TX70 AP001160.3-201ENST00000601484 763 ntBASIC17.24■□□□□ 0.35
COL6A5A8TX70 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC17.24■□□□□ 0.35
COL6A5A8TX70 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A5A8TX70 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A5A8TX70 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A5A8TX70 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC17.24■□□□□ 0.35
COL6A5A8TX70 MIPEPP3-201ENST00000412105 444 ntBASIC17.24■□□□□ 0.35
COL6A5A8TX70 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC17.24■□□□□ 0.35
COL6A5A8TX70 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC17.24■□□□□ 0.35
COL6A5A8TX70 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A5A8TX70 ASL-203ENST00000380839 1765 ntTSL 5 BASIC17.24■□□□□ 0.35
COL6A5A8TX70 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COL6A5A8TX70 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A5A8TX70 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.23■□□□□ 0.35
COL6A5A8TX70 SHF-207ENST00000560540 2062 ntTSL 5 BASIC17.23■□□□□ 0.35
COL6A5A8TX70 RCN1P1-201ENST00000400413 996 ntBASIC17.23■□□□□ 0.35
COL6A5A8TX70 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A5A8TX70 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A5A8TX70 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A5A8TX70 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A5A8TX70 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A5A8TX70 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A5A8TX70 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A5A8TX70 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC17.22■□□□□ 0.35
COL6A5A8TX70 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.22■□□□□ 0.35
COL6A5A8TX70 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.22■□□□□ 0.35
COL6A5A8TX70 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.22■□□□□ 0.35
COL6A5A8TX70 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.22■□□□□ 0.35
COL6A5A8TX70 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL6A5A8TX70 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.22■□□□□ 0.35
COL6A5A8TX70 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.22■□□□□ 0.35
COL6A5A8TX70 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A5A8TX70 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A5A8TX70 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC17.22■□□□□ 0.35
COL6A5A8TX70 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.22■□□□□ 0.35
COL6A5A8TX70 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A5A8TX70 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC17.22■□□□□ 0.35
COL6A5A8TX70 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC17.22■□□□□ 0.35
COL6A5A8TX70 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A5A8TX70 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
COL6A5A8TX70 FP325331.1-202ENST00000623531 1380 ntBASIC17.22■□□□□ 0.35
COL6A5A8TX70 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC17.22■□□□□ 0.35
COL6A5A8TX70 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A5A8TX70 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A5A8TX70 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms