Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 MIR6724-1-201ENST00000616420 92 ntBASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 MIR6724-2-201ENST00000616483 92 ntBASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 MIR6724-4-201ENST00000617390 92 ntBASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 MIR6724-3-201ENST00000622482 92 ntBASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.11■□□□□ 0.81
CPSF4LA6NMK7 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4LA6NMK7 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4LA6NMK7 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4LA6NMK7 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4LA6NMK7 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4LA6NMK7 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4LA6NMK7 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4LA6NMK7 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4LA6NMK7 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.1■□□□□ 0.81
CPSF4LA6NMK7 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.1■□□□□ 0.81
CPSF4LA6NMK7 FBXW4P1-201ENST00000426721 2239 ntBASIC20.1■□□□□ 0.81
CPSF4LA6NMK7 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CPSF4LA6NMK7 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CPSF4LA6NMK7 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
CPSF4LA6NMK7 AC007375.3-201ENST00000600936 2314 ntBASIC20.09■□□□□ 0.81
CPSF4LA6NMK7 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.09■□□□□ 0.81
CPSF4LA6NMK7 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CPSF4LA6NMK7 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CPSF4LA6NMK7 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CPSF4LA6NMK7 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CPSF4LA6NMK7 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CPSF4LA6NMK7 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.09■□□□□ 0.81
CPSF4LA6NMK7 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CPSF4LA6NMK7 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CPSF4LA6NMK7 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.08■□□□□ 0.81
CPSF4LA6NMK7 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.08■□□□□ 0.81
CPSF4LA6NMK7 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CPSF4LA6NMK7 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CPSF4LA6NMK7 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CPSF4LA6NMK7 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
CPSF4LA6NMK7 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.08■□□□□ 0.81
CPSF4LA6NMK7 AL117332.1-201ENST00000622628 974 ntBASIC20.08■□□□□ 0.81
CPSF4LA6NMK7 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.08■□□□□ 0.8
CPSF4LA6NMK7 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CPSF4LA6NMK7 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.08■□□□□ 0.8
CPSF4LA6NMK7 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
CPSF4LA6NMK7 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CPSF4LA6NMK7 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.07■□□□□ 0.8
CPSF4LA6NMK7 KRT16P3-201ENST00000439127 1283 ntBASIC20.07■□□□□ 0.8
CPSF4LA6NMK7 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.07■□□□□ 0.8
CPSF4LA6NMK7 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.07■□□□□ 0.8
CPSF4LA6NMK7 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.07■□□□□ 0.8
CPSF4LA6NMK7 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.07■□□□□ 0.8
CPSF4LA6NMK7 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CPSF4LA6NMK7 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CPSF4LA6NMK7 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CPSF4LA6NMK7 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.07■□□□□ 0.8
CPSF4LA6NMK7 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
CPSF4LA6NMK7 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4LA6NMK7 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4LA6NMK7 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.06■□□□□ 0.8
CPSF4LA6NMK7 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4LA6NMK7 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4LA6NMK7 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4LA6NMK7 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4LA6NMK7 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
CPSF4LA6NMK7 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.06■□□□□ 0.8
CPSF4LA6NMK7 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4LA6NMK7 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.06■□□□□ 0.8
CPSF4LA6NMK7 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CPSF4LA6NMK7 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4LA6NMK7 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CPSF4LA6NMK7 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CPSF4LA6NMK7 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.05■□□□□ 0.8
CPSF4LA6NMK7 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CPSF4LA6NMK7 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CPSF4LA6NMK7 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.05■□□□□ 0.8
CPSF4LA6NMK7 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.05■□□□□ 0.8
CPSF4LA6NMK7 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CPSF4LA6NMK7 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CPSF4LA6NMK7 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CPSF4LA6NMK7 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CPSF4LA6NMK7 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CPSF4LA6NMK7 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CPSF4LA6NMK7 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.04■□□□□ 0.8
CPSF4LA6NMK7 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CPSF4LA6NMK7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CPSF4LA6NMK7 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.04■□□□□ 0.8
CPSF4LA6NMK7 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CPSF4LA6NMK7 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.04■□□□□ 0.8
CPSF4LA6NMK7 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CPSF4LA6NMK7 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms