Protein–RNA interactions for Protein: A0A0B4J241

TRAV13-1, T-cell receptor alpha variable 13-1 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV13-1A0A0B4J241 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV13-1A0A0B4J241 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
TRAV13-1A0A0B4J241 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV13-1A0A0B4J241 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 ABHD17AP5-201ENST00000580133 923 ntBASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 NTF6A-201ENST00000591175 560 ntBASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV13-1A0A0B4J241 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV13-1A0A0B4J241 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV13-1A0A0B4J241 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV13-1A0A0B4J241 REST-206ENST00000612429 1376 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV13-1A0A0B4J241 REST-207ENST00000616975 1370 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV13-1A0A0B4J241 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV13-1A0A0B4J241 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV13-1A0A0B4J241 AC144652.1-201ENST00000609974 1624 ntBASIC15.15■□□□□ 0.02
TRAV13-1A0A0B4J241 AC074183.2-201ENST00000623112 922 ntBASIC15.15■□□□□ 0.02
TRAV13-1A0A0B4J241 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV13-1A0A0B4J241 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV13-1A0A0B4J241 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV13-1A0A0B4J241 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV13-1A0A0B4J241 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
TRAV13-1A0A0B4J241 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV13-1A0A0B4J241 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 AC010980.1-201ENST00000587192 1142 ntBASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC15.14■□□□□ 0.01
TRAV13-1A0A0B4J241 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 BEX3-202ENST00000372634 753 ntTSL 2 BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 BRD4-212ENST00000630599 726 ntTSL 2 BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV13-1A0A0B4J241 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 AC087742.1-201ENST00000575880 1738 ntBASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 AC004987.1-201ENST00000428627 508 ntBASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 ATP5G2P3-201ENST00000429083 425 ntBASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 PVT1_1.1-201ENST00000615125 194 ntBASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV13-1A0A0B4J241 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
TRAV13-1A0A0B4J241 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV13-1A0A0B4J241 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV13-1A0A0B4J241 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV13-1A0A0B4J241 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV13-1A0A0B4J241 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV13-1A0A0B4J241 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV13-1A0A0B4J241 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
TRAV13-1A0A0B4J241 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC15.11■□□□□ 0.01
TRAV13-1A0A0B4J241 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms