Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 DSCR3-201ENST00000309117 3256 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CLK1P49759 HNRNPL-210ENST00000600873 1633 ntTSL 5 BASIC12.2□□□□□ -0.46
CLK1P49759 PRKN-206ENST00000366898 4180 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CLK1P49759 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CLK1P49759 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CLK1P49759 TPI1P3-201ENST00000335020 740 ntBASIC12.2□□□□□ -0.46
CLK1P49759 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CLK1P49759 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CLK1P49759 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC12.2□□□□□ -0.46
CLK1P49759 DDR1-224ENST00000376567 3832 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
CLK1P49759 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CLK1P49759 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
CLK1P49759 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC12.2□□□□□ -0.46
CLK1P49759 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CLK1P49759 LYPLA2P1-203ENST00000447689 696 ntBASIC12.2□□□□□ -0.46
CLK1P49759 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC12.2□□□□□ -0.46
CLK1P49759 OR2A1-AS1-210ENST00000496968 531 ntBASIC12.2□□□□□ -0.46
CLK1P49759 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC12.2□□□□□ -0.46
CLK1P49759 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC12.2□□□□□ -0.46
CLK1P49759 MIR4687-201ENST00000583618 80 ntBASIC12.2□□□□□ -0.46
CLK1P49759 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC12.2□□□□□ -0.46
CLK1P49759 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC12.2□□□□□ -0.46
CLK1P49759 AC002044.2-201ENST00000624910 970 ntBASIC12.2□□□□□ -0.46
CLK1P49759 MKL1-213ENST00000620651 3757 ntTSL 5 BASIC12.2□□□□□ -0.46
CLK1P49759 ACO2-202ENST00000396512 2811 ntTSL 5 BASIC12.2□□□□□ -0.46
CLK1P49759 AC120114.4-201ENST00000623731 2194 ntBASIC12.2□□□□□ -0.46
CLK1P49759 GPD1-201ENST00000301149 3082 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CLK1P49759 BCDIN3D-AS1-201ENST00000548872 3078 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CLK1P49759 PCDHA4-204ENST00000618834 10557 ntBASIC12.2□□□□□ -0.46
CLK1P49759 AJ239328.1-201ENST00000626237 4807 ntTSL 5 BASIC12.2□□□□□ -0.46
CLK1P49759 RNF130-207ENST00000522208 9945 ntTSL 5 BASIC12.2□□□□□ -0.46
CLK1P49759 PAFAH1B2-204ENST00000527958 4198 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CLK1P49759 MPP4-204ENST00000409143 2082 ntTSL 2 BASIC12.2□□□□□ -0.46
CLK1P49759 LINC00642-201ENST00000419459 2026 ntTSL 2 BASIC12.2□□□□□ -0.46
CLK1P49759 AC243964.3-201ENST00000623022 2028 ntBASIC12.2□□□□□ -0.46
CLK1P49759 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CLK1P49759 PPP1R18-202ENST00000399199 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CLK1P49759 ZDHHC9-201ENST00000357166 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CLK1P49759 RANGAP1-201ENST00000356244 3060 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 AC093525.7-201ENST00000569852 3626 ntBASIC12.19□□□□□ -0.46
CLK1P49759 ZNF277-203ENST00000421043 2218 ntTSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 IL1RAP-211ENST00000439062 2244 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 CNTNAP2-207ENST00000628930 1944 ntTSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 ALPL-203ENST00000374832 2193 ntAPPRIS P3 TSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 CCDC57-205ENST00000392346 2964 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 RHBDL2-201ENST00000289248 2129 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 PLAGL1-209ENST00000444202 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 RAB43-205ENST00000393308 4193 ntAPPRIS P1 TSL 4 BASIC12.19□□□□□ -0.46
CLK1P49759 AL365181.1-201ENST00000564032 1828 ntBASIC12.19□□□□□ -0.46
CLK1P49759 ENPP4-201ENST00000321037 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 TRPV1-201ENST00000310522 2340 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 MPPE1-202ENST00000317235 2324 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 PCDHGA7-201ENST00000518325 4605 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 PLK4-210ENST00000514379 3060 ntTSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 U3.5-201ENST00000363448 216 ntBASIC12.19□□□□□ -0.46
CLK1P49759 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC12.19□□□□□ -0.46
CLK1P49759 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC12.19□□□□□ -0.46
CLK1P49759 RPSAP31-201ENST00000416648 895 ntBASIC12.19□□□□□ -0.46
CLK1P49759 HINT2P1-201ENST00000419438 481 ntBASIC12.19□□□□□ -0.46
CLK1P49759 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC12.19□□□□□ -0.46
CLK1P49759 HNRNPA1P33-201ENST00000421426 561 ntBASIC12.19□□□□□ -0.46
CLK1P49759 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
CLK1P49759 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC12.19□□□□□ -0.46
CLK1P49759 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 HINT1-204ENST00000506908 681 ntTSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 AL137779.3-201ENST00000553295 729 ntBASIC12.19□□□□□ -0.46
CLK1P49759 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
CLK1P49759 TJP2-201ENST00000348208 4058 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 SRC-203ENST00000373567 4321 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 AC091948.1-201ENST00000501695 2033 ntTSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 COG4-202ENST00000393612 2756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 PAK1-215ENST00000530617 3001 ntTSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 OLFML2A-201ENST00000288815 5964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 UBASH3B-201ENST00000284273 6912 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 KDM6A-201ENST00000377967 5438 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 ST6GAL1-215ENST00000457772 3947 ntTSL 5 BASIC12.19□□□□□ -0.46
CLK1P49759 GTF2I-218ENST00000620879 4352 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 ANKRD20A4-201ENST00000357336 4137 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 PM20D1-201ENST00000367136 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 ARHGAP12-205ENST00000396144 5084 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 ATF4P4-201ENST00000393544 1930 ntBASIC12.19□□□□□ -0.46
CLK1P49759 CDX2-201ENST00000381020 4053 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 EIF4E3-205ENST00000448225 6209 ntTSL 5 BASIC12.19□□□□□ -0.46
CLK1P49759 RECQL5-204ENST00000423245 3576 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 AIF1L-206ENST00000372302 3340 ntTSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 NOSTRIN-203ENST00000397209 1437 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 APOL2-203ENST00000451256 1421 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
CLK1P49759 Z97653.2-201ENST00000623057 1418 ntBASIC12.19□□□□□ -0.46
CLK1P49759 PEG3-202ENST00000593695 4741 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CLK1P49759 LGALS8-208ENST00000416919 6097 ntTSL 5 BASIC12.19□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms