Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC42■■■■■ 4.31
SHROOM4Q9ULL8 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC42■■■■■ 4.31
SHROOM4Q9ULL8 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC42■■■■■ 4.31
SHROOM4Q9ULL8 AL050303.2-201ENST00000619798 666 ntBASIC42■■■■■ 4.31
SHROOM4Q9ULL8 PREB-202ENST00000406567 1910 ntTSL 5 BASIC42■■■■■ 4.31
SHROOM4Q9ULL8 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC42■■■■■ 4.31
SHROOM4Q9ULL8 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC42■■■■■ 4.31
SHROOM4Q9ULL8 COX20-201ENST00000366528 568 ntTSL 2 BASIC41.99■■■■■ 4.31
SHROOM4Q9ULL8 AC093827.2-201ENST00000512654 315 ntBASIC41.99■■■■■ 4.31
SHROOM4Q9ULL8 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC41.99■■■■■ 4.31
SHROOM4Q9ULL8 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC41.99■■■■■ 4.31
SHROOM4Q9ULL8 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC41.99■■■■■ 4.31
SHROOM4Q9ULL8 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC41.99■■■■■ 4.31
SHROOM4Q9ULL8 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC41.99■■■■■ 4.31
SHROOM4Q9ULL8 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC41.99■■■■■ 4.31
SHROOM4Q9ULL8 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC41.99■■■■■ 4.31
SHROOM4Q9ULL8 KRT19P1-201ENST00000405746 1186 ntBASIC41.98■■■■■ 4.31
SHROOM4Q9ULL8 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC41.98■■■■■ 4.31
SHROOM4Q9ULL8 WT1-AS_3.1-201ENST00000613262 234 ntBASIC41.98■■■■■ 4.31
SHROOM4Q9ULL8 H19-210ENST00000439725 1929 ntTSL 2 BASIC41.98■■■■■ 4.31
SHROOM4Q9ULL8 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC41.98■■■■■ 4.31
SHROOM4Q9ULL8 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC41.98■■■■■ 4.31
SHROOM4Q9ULL8 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC41.98■■■■■ 4.31
SHROOM4Q9ULL8 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC41.98■■■■■ 4.31
SHROOM4Q9ULL8 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC41.98■■■■■ 4.31
SHROOM4Q9ULL8 SLC7A5P2-201ENST00000553010 536 ntBASIC41.98■■■■■ 4.31
SHROOM4Q9ULL8 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC41.98■■■■■ 4.31
SHROOM4Q9ULL8 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC41.98■■■■■ 4.31
SHROOM4Q9ULL8 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC41.98■■■■■ 4.31
SHROOM4Q9ULL8 PARP1-210ENST00000629232 477 ntTSL 5 BASIC41.98■■■■■ 4.31
SHROOM4Q9ULL8 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC41.97■■■■■ 4.31
SHROOM4Q9ULL8 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC41.97■■■■■ 4.31
SHROOM4Q9ULL8 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC41.97■■■■■ 4.31
SHROOM4Q9ULL8 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC41.97■■■■■ 4.31
SHROOM4Q9ULL8 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC41.97■■■■■ 4.31
SHROOM4Q9ULL8 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC41.97■■■■■ 4.31
SHROOM4Q9ULL8 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC41.97■■■■■ 4.31
SHROOM4Q9ULL8 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC41.96■■■■■ 4.31
SHROOM4Q9ULL8 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC41.96■■■■■ 4.31
SHROOM4Q9ULL8 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC41.96■■■■■ 4.31
SHROOM4Q9ULL8 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC41.95■■■■■ 4.31
SHROOM4Q9ULL8 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC41.95■■■■■ 4.31
SHROOM4Q9ULL8 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC41.95■■■■■ 4.31
SHROOM4Q9ULL8 LINC01529-204ENST00000636474 1715 ntBASIC41.95■■■■■ 4.31
SHROOM4Q9ULL8 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC41.95■■■■■ 4.31
SHROOM4Q9ULL8 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC41.95■■■■■ 4.31
SHROOM4Q9ULL8 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC41.94■■■■■ 4.31
SHROOM4Q9ULL8 MIR4651-201ENST00000582622 73 ntBASIC41.94■■■■■ 4.3
SHROOM4Q9ULL8 MDK-213ENST00000617138 635 ntTSL 2 BASIC41.94■■■■■ 4.3
SHROOM4Q9ULL8 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC41.94■■■■■ 4.3
SHROOM4Q9ULL8 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC41.94■■■■■ 4.3
SHROOM4Q9ULL8 FP325331.1-202ENST00000623531 1380 ntBASIC41.94■■■■■ 4.3
SHROOM4Q9ULL8 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC41.93■■■■■ 4.3
SHROOM4Q9ULL8 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC41.93■■■■■ 4.3
SHROOM4Q9ULL8 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC41.93■■■■■ 4.3
SHROOM4Q9ULL8 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC41.93■■■■■ 4.3
SHROOM4Q9ULL8 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC41.92■■■■■ 4.3
SHROOM4Q9ULL8 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC41.92■■■■■ 4.3
SHROOM4Q9ULL8 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC41.92■■■■■ 4.3
SHROOM4Q9ULL8 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC41.92■■■■■ 4.3
SHROOM4Q9ULL8 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC41.91■■■■■ 4.3
SHROOM4Q9ULL8 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC41.91■■■■■ 4.3
SHROOM4Q9ULL8 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC41.9■■■■■ 4.3
SHROOM4Q9ULL8 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC41.9■■■■■ 4.3
SHROOM4Q9ULL8 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC41.9■■■■■ 4.3
SHROOM4Q9ULL8 TSPY6P-201ENST00000448518 926 ntBASIC41.9■■■■■ 4.3
SHROOM4Q9ULL8 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC41.9■■■■■ 4.3
SHROOM4Q9ULL8 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC41.89■■■■■ 4.3
SHROOM4Q9ULL8 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC41.89■■■■■ 4.3
SHROOM4Q9ULL8 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC41.89■■■■■ 4.3
SHROOM4Q9ULL8 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC41.89■■■■■ 4.3
SHROOM4Q9ULL8 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC41.89■■■■■ 4.3
SHROOM4Q9ULL8 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC41.89■■■■■ 4.3
SHROOM4Q9ULL8 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC41.89■■■■■ 4.3
SHROOM4Q9ULL8 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC41.89■■■■■ 4.3
SHROOM4Q9ULL8 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC41.89■■■■■ 4.3
SHROOM4Q9ULL8 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC41.88■■■■■ 4.29
SHROOM4Q9ULL8 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC41.88■■■■■ 4.29
SHROOM4Q9ULL8 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC41.88■■■■■ 4.29
SHROOM4Q9ULL8 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC41.88■■■■■ 4.29
SHROOM4Q9ULL8 AC011767.1-201ENST00000617410 1153 ntBASIC41.88■■■■■ 4.29
SHROOM4Q9ULL8 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC41.87■■■■■ 4.29
SHROOM4Q9ULL8 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC41.87■■■■■ 4.29
SHROOM4Q9ULL8 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC41.87■■■■■ 4.29
SHROOM4Q9ULL8 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC41.87■■■■■ 4.29
SHROOM4Q9ULL8 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC41.87■■■■■ 4.29
SHROOM4Q9ULL8 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC41.87■■■■■ 4.29
SHROOM4Q9ULL8 MFSD11-216ENST00000590393 1141 ntBASIC41.87■■■■■ 4.29
SHROOM4Q9ULL8 AL121832.2-201ENST00000610979 668 ntBASIC41.87■■■■■ 4.29
SHROOM4Q9ULL8 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC41.86■■■■■ 4.29
SHROOM4Q9ULL8 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC41.86■■■■■ 4.29
SHROOM4Q9ULL8 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC41.86■■■■■ 4.29
SHROOM4Q9ULL8 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC41.85■■■■■ 4.29
SHROOM4Q9ULL8 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC41.85■■■■■ 4.29
SHROOM4Q9ULL8 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC41.85■■■■■ 4.29
SHROOM4Q9ULL8 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC41.85■■■■■ 4.29
SHROOM4Q9ULL8 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC41.84■■■■■ 4.29
SHROOM4Q9ULL8 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC41.84■■■■■ 4.29
SHROOM4Q9ULL8 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC41.84■■■■■ 4.29
SHROOM4Q9ULL8 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC41.84■■■■■ 4.29
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms