Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USE1Q9NZ43 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
USE1Q9NZ43 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USE1Q9NZ43 AC073130.3-201ENST00000624389 2278 ntBASIC20.32■□□□□ 0.84
USE1Q9NZ43 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
USE1Q9NZ43 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USE1Q9NZ43 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USE1Q9NZ43 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
USE1Q9NZ43 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.31■□□□□ 0.84
USE1Q9NZ43 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
USE1Q9NZ43 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.31■□□□□ 0.84
USE1Q9NZ43 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
USE1Q9NZ43 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USE1Q9NZ43 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USE1Q9NZ43 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.31■□□□□ 0.84
USE1Q9NZ43 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USE1Q9NZ43 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
USE1Q9NZ43 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
USE1Q9NZ43 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
USE1Q9NZ43 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
USE1Q9NZ43 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.31■□□□□ 0.84
USE1Q9NZ43 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
USE1Q9NZ43 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USE1Q9NZ43 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USE1Q9NZ43 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.31■□□□□ 0.84
USE1Q9NZ43 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USE1Q9NZ43 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USE1Q9NZ43 MIR6765-201ENST00000614092 87 ntBASIC20.3■□□□□ 0.84
USE1Q9NZ43 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USE1Q9NZ43 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USE1Q9NZ43 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.3■□□□□ 0.84
USE1Q9NZ43 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USE1Q9NZ43 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.3■□□□□ 0.84
USE1Q9NZ43 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.3■□□□□ 0.84
USE1Q9NZ43 AC244015.2-201ENST00000616358 1861 ntBASIC20.3■□□□□ 0.84
USE1Q9NZ43 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USE1Q9NZ43 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
USE1Q9NZ43 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.29■□□□□ 0.84
USE1Q9NZ43 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USE1Q9NZ43 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USE1Q9NZ43 AC144652.1-201ENST00000609974 1624 ntBASIC20.29■□□□□ 0.84
USE1Q9NZ43 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USE1Q9NZ43 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC20.29■□□□□ 0.84
USE1Q9NZ43 AL592293.1-201ENST00000502889 1188 ntBASIC20.29■□□□□ 0.84
USE1Q9NZ43 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.29■□□□□ 0.84
USE1Q9NZ43 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
USE1Q9NZ43 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USE1Q9NZ43 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USE1Q9NZ43 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
USE1Q9NZ43 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USE1Q9NZ43 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.29■□□□□ 0.84
USE1Q9NZ43 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.29■□□□□ 0.84
USE1Q9NZ43 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USE1Q9NZ43 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USE1Q9NZ43 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USE1Q9NZ43 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
USE1Q9NZ43 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USE1Q9NZ43 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
USE1Q9NZ43 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USE1Q9NZ43 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USE1Q9NZ43 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USE1Q9NZ43 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USE1Q9NZ43 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.28■□□□□ 0.84
USE1Q9NZ43 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USE1Q9NZ43 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
USE1Q9NZ43 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USE1Q9NZ43 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USE1Q9NZ43 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.27■□□□□ 0.84
USE1Q9NZ43 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.27■□□□□ 0.84
USE1Q9NZ43 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USE1Q9NZ43 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USE1Q9NZ43 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.27■□□□□ 0.84
USE1Q9NZ43 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USE1Q9NZ43 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USE1Q9NZ43 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
USE1Q9NZ43 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
USE1Q9NZ43 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
USE1Q9NZ43 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
USE1Q9NZ43 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.26■□□□□ 0.83
USE1Q9NZ43 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USE1Q9NZ43 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
USE1Q9NZ43 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USE1Q9NZ43 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USE1Q9NZ43 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USE1Q9NZ43 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USE1Q9NZ43 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USE1Q9NZ43 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USE1Q9NZ43 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USE1Q9NZ43 HSD17B1P1-201ENST00000590052 955 ntBASIC20.26■□□□□ 0.83
USE1Q9NZ43 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
USE1Q9NZ43 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
USE1Q9NZ43 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USE1Q9NZ43 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.26■□□□□ 0.83
USE1Q9NZ43 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USE1Q9NZ43 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.25■□□□□ 0.83
USE1Q9NZ43 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.25■□□□□ 0.83
USE1Q9NZ43 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.25■□□□□ 0.83
USE1Q9NZ43 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USE1Q9NZ43 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.25■□□□□ 0.83
USE1Q9NZ43 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms