Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 RPP21-222ENST00000433076 577 ntTSL 2 BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 AC139530.1-201ENST00000575312 1977 ntBASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
LRRC40Q9H9A6 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.23■■□□□ 1.15
LRRC40Q9H9A6 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC40Q9H9A6 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC22.23■■□□□ 1.15
LRRC40Q9H9A6 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
LRRC40Q9H9A6 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC40Q9H9A6 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC40Q9H9A6 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC40Q9H9A6 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC40Q9H9A6 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC40Q9H9A6 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC40Q9H9A6 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC22.22■■□□□ 1.15
LRRC40Q9H9A6 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRRC40Q9H9A6 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRRC40Q9H9A6 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC22.22■■□□□ 1.15
LRRC40Q9H9A6 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRRC40Q9H9A6 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRRC40Q9H9A6 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC22.22■■□□□ 1.15
LRRC40Q9H9A6 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
LRRC40Q9H9A6 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC22.22■■□□□ 1.15
LRRC40Q9H9A6 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC22.22■■□□□ 1.15
LRRC40Q9H9A6 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC22.22■■□□□ 1.15
LRRC40Q9H9A6 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
LRRC40Q9H9A6 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRRC40Q9H9A6 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRRC40Q9H9A6 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 TRIR-202ENST00000588213 841 ntTSL 3 BASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 AC092053.2-201ENST00000640557 1818 ntBASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC22.21■■□□□ 1.15
LRRC40Q9H9A6 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC22.2■■□□□ 1.15
LRRC40Q9H9A6 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC22.2■■□□□ 1.15
LRRC40Q9H9A6 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC22.2■■□□□ 1.14
LRRC40Q9H9A6 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LRRC40Q9H9A6 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
LRRC40Q9H9A6 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
LRRC40Q9H9A6 MIR3181-201ENST00000578512 73 ntBASIC22.2■■□□□ 1.14
LRRC40Q9H9A6 CA15P2-201ENST00000611168 834 ntBASIC22.2■■□□□ 1.14
LRRC40Q9H9A6 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC22.2■■□□□ 1.14
LRRC40Q9H9A6 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LRRC40Q9H9A6 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC22.2■■□□□ 1.14
LRRC40Q9H9A6 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC22.2■■□□□ 1.14
LRRC40Q9H9A6 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
LRRC40Q9H9A6 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LRRC40Q9H9A6 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
LRRC40Q9H9A6 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC40Q9H9A6 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC40Q9H9A6 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC22.19■■□□□ 1.14
LRRC40Q9H9A6 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC22.19■■□□□ 1.14
LRRC40Q9H9A6 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC40Q9H9A6 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC40Q9H9A6 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
LRRC40Q9H9A6 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC22.19■■□□□ 1.14
LRRC40Q9H9A6 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC40Q9H9A6 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
LRRC40Q9H9A6 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC40Q9H9A6 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC22.18■■□□□ 1.14
LRRC40Q9H9A6 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
LRRC40Q9H9A6 AC137767.1-201ENST00000602918 1920 ntBASIC22.18■■□□□ 1.14
LRRC40Q9H9A6 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC22.18■■□□□ 1.14
LRRC40Q9H9A6 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRRC40Q9H9A6 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
LRRC40Q9H9A6 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC22.18■■□□□ 1.14
LRRC40Q9H9A6 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC22.18■■□□□ 1.14
LRRC40Q9H9A6 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRRC40Q9H9A6 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRRC40Q9H9A6 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LRRC40Q9H9A6 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRRC40Q9H9A6 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRRC40Q9H9A6 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LRRC40Q9H9A6 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRRC40Q9H9A6 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
LRRC40Q9H9A6 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRRC40Q9H9A6 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.17■■□□□ 1.14
LRRC40Q9H9A6 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
LRRC40Q9H9A6 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRRC40Q9H9A6 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.17■■□□□ 1.14
LRRC40Q9H9A6 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRRC40Q9H9A6 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms