Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX3-1Q99801 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX3-1Q99801 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC19.03■□□□□ 0.64
NKX3-1Q99801 AC009299.2-201ENST00000482477 511 ntBASIC19.03■□□□□ 0.64
NKX3-1Q99801 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC19.03■□□□□ 0.64
NKX3-1Q99801 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX3-1Q99801 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX3-1Q99801 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.03■□□□□ 0.64
NKX3-1Q99801 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX3-1Q99801 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX3-1Q99801 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.02■□□□□ 0.64
NKX3-1Q99801 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
NKX3-1Q99801 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
NKX3-1Q99801 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
NKX3-1Q99801 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
NKX3-1Q99801 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
NKX3-1Q99801 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.02■□□□□ 0.64
NKX3-1Q99801 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.02■□□□□ 0.64
NKX3-1Q99801 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
NKX3-1Q99801 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.02■□□□□ 0.64
NKX3-1Q99801 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
NKX3-1Q99801 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
NKX3-1Q99801 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
NKX3-1Q99801 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.02■□□□□ 0.64
NKX3-1Q99801 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
NKX3-1Q99801 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
NKX3-1Q99801 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC19.01■□□□□ 0.63
NKX3-1Q99801 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX3-1Q99801 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX3-1Q99801 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NKX3-1Q99801 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC19.01■□□□□ 0.63
NKX3-1Q99801 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX3-1Q99801 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
NKX3-1Q99801 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
NKX3-1Q99801 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX3-1Q99801 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.01■□□□□ 0.63
NKX3-1Q99801 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.01■□□□□ 0.63
NKX3-1Q99801 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.01■□□□□ 0.63
NKX3-1Q99801 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX3-1Q99801 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX3-1Q99801 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NKX3-1Q99801 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
NKX3-1Q99801 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19■□□□□ 0.63
NKX3-1Q99801 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19■□□□□ 0.63
NKX3-1Q99801 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19■□□□□ 0.63
NKX3-1Q99801 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
NKX3-1Q99801 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC19■□□□□ 0.63
NKX3-1Q99801 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
NKX3-1Q99801 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19■□□□□ 0.63
NKX3-1Q99801 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19■□□□□ 0.63
NKX3-1Q99801 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19■□□□□ 0.63
NKX3-1Q99801 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
NKX3-1Q99801 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19■□□□□ 0.63
NKX3-1Q99801 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NKX3-1Q99801 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19■□□□□ 0.63
NKX3-1Q99801 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
NKX3-1Q99801 AL024507.2-201ENST00000606070 2574 ntBASIC18.99■□□□□ 0.63
NKX3-1Q99801 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NKX3-1Q99801 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX3-1Q99801 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NKX3-1Q99801 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX3-1Q99801 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX3-1Q99801 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.99■□□□□ 0.63
NKX3-1Q99801 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NKX3-1Q99801 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
NKX3-1Q99801 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
NKX3-1Q99801 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.99■□□□□ 0.63
NKX3-1Q99801 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
NKX3-1Q99801 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX3-1Q99801 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
NKX3-1Q99801 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX3-1Q99801 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC18.98■□□□□ 0.63
NKX3-1Q99801 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC18.98■□□□□ 0.63
NKX3-1Q99801 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX3-1Q99801 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC18.98■□□□□ 0.63
NKX3-1Q99801 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NKX3-1Q99801 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC18.98■□□□□ 0.63
NKX3-1Q99801 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX3-1Q99801 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX3-1Q99801 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX3-1Q99801 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
NKX3-1Q99801 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX3-1Q99801 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX3-1Q99801 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
NKX3-1Q99801 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX3-1Q99801 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX3-1Q99801 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX3-1Q99801 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
NKX3-1Q99801 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.97■□□□□ 0.63
NKX3-1Q99801 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX3-1Q99801 AC026310.3-201ENST00000625186 2373 ntBASIC18.97■□□□□ 0.63
NKX3-1Q99801 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
NKX3-1Q99801 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX3-1Q99801 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.97■□□□□ 0.63
NKX3-1Q99801 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
NKX3-1Q99801 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC18.97■□□□□ 0.63
NKX3-1Q99801 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC18.97■□□□□ 0.63
NKX3-1Q99801 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.97■□□□□ 0.63
NKX3-1Q99801 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
NKX3-1Q99801 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms