Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 AC233992.3-201ENST00000607491 485 ntBASIC20.12■□□□□ 0.81
TIMP4Q99727 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TIMP4Q99727 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.12■□□□□ 0.81
TIMP4Q99727 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.12■□□□□ 0.81
TIMP4Q99727 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
TIMP4Q99727 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
TIMP4Q99727 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
TIMP4Q99727 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.12■□□□□ 0.81
TIMP4Q99727 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TIMP4Q99727 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TIMP4Q99727 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.11■□□□□ 0.81
TIMP4Q99727 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TIMP4Q99727 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TIMP4Q99727 BX842568.3-201ENST00000418104 571 ntBASIC20.11■□□□□ 0.81
TIMP4Q99727 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.11■□□□□ 0.81
TIMP4Q99727 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TIMP4Q99727 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.11■□□□□ 0.81
TIMP4Q99727 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TIMP4Q99727 DUX4L4-201ENST00000566884 1269 ntBASIC20.11■□□□□ 0.81
TIMP4Q99727 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.11■□□□□ 0.81
TIMP4Q99727 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TIMP4Q99727 AC144652.1-201ENST00000609974 1624 ntBASIC20.11■□□□□ 0.81
TIMP4Q99727 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
TIMP4Q99727 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TIMP4Q99727 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TIMP4Q99727 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.1■□□□□ 0.81
TIMP4Q99727 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TIMP4Q99727 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.1■□□□□ 0.81
TIMP4Q99727 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TIMP4Q99727 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.1■□□□□ 0.81
TIMP4Q99727 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.1■□□□□ 0.81
TIMP4Q99727 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TIMP4Q99727 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TIMP4Q99727 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TIMP4Q99727 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
TIMP4Q99727 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
TIMP4Q99727 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TIMP4Q99727 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
TIMP4Q99727 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TIMP4Q99727 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TIMP4Q99727 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TIMP4Q99727 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TIMP4Q99727 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
TIMP4Q99727 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.09■□□□□ 0.81
TIMP4Q99727 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TIMP4Q99727 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TIMP4Q99727 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TIMP4Q99727 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TIMP4Q99727 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TIMP4Q99727 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
TIMP4Q99727 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TIMP4Q99727 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.09■□□□□ 0.81
TIMP4Q99727 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.09■□□□□ 0.81
TIMP4Q99727 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.09■□□□□ 0.81
TIMP4Q99727 AL499627.2-201ENST00000606283 725 ntBASIC20.09■□□□□ 0.81
TIMP4Q99727 LINC01529-204ENST00000636474 1715 ntBASIC20.09■□□□□ 0.81
TIMP4Q99727 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TIMP4Q99727 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TIMP4Q99727 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TIMP4Q99727 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
TIMP4Q99727 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.08■□□□□ 0.81
TIMP4Q99727 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.08■□□□□ 0.81
TIMP4Q99727 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.08■□□□□ 0.81
TIMP4Q99727 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.81
TIMP4Q99727 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.08■□□□□ 0.81
TIMP4Q99727 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.08■□□□□ 0.81
TIMP4Q99727 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TIMP4Q99727 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
TIMP4Q99727 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.08■□□□□ 0.8
TIMP4Q99727 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TIMP4Q99727 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TIMP4Q99727 AC133637.1-201ENST00000624115 1537 ntBASIC20.07■□□□□ 0.8
TIMP4Q99727 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TIMP4Q99727 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TIMP4Q99727 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
TIMP4Q99727 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TIMP4Q99727 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.07■□□□□ 0.8
TIMP4Q99727 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.07■□□□□ 0.8
TIMP4Q99727 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
TIMP4Q99727 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.07■□□□□ 0.8
TIMP4Q99727 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
TIMP4Q99727 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TIMP4Q99727 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TIMP4Q99727 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
TIMP4Q99727 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TIMP4Q99727 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TIMP4Q99727 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.07■□□□□ 0.8
TIMP4Q99727 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
TIMP4Q99727 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TIMP4Q99727 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.06■□□□□ 0.8
TIMP4Q99727 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
TIMP4Q99727 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
TIMP4Q99727 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
TIMP4Q99727 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.06■□□□□ 0.8
TIMP4Q99727 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TIMP4Q99727 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.06■□□□□ 0.8
TIMP4Q99727 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.06■□□□□ 0.8
TIMP4Q99727 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.06■□□□□ 0.8
TIMP4Q99727 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TIMP4Q99727 AC127496.7-201ENST00000625110 1798 ntBASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms