Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CTHRC1Q96CG8 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CTHRC1Q96CG8 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTHRC1Q96CG8 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTHRC1Q96CG8 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTHRC1Q96CG8 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CTHRC1Q96CG8 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
CTHRC1Q96CG8 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
CTHRC1Q96CG8 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTHRC1Q96CG8 GUSBP5-202ENST00000510805 1989 ntBASIC20.4■□□□□ 0.86
CTHRC1Q96CG8 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.4■□□□□ 0.86
CTHRC1Q96CG8 AC133561.4-201ENST00000566112 224 ntBASIC20.4■□□□□ 0.86
CTHRC1Q96CG8 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTHRC1Q96CG8 AC137767.1-201ENST00000602918 1920 ntBASIC20.4■□□□□ 0.86
CTHRC1Q96CG8 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CTHRC1Q96CG8 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CTHRC1Q96CG8 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.86
CTHRC1Q96CG8 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CTHRC1Q96CG8 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
CTHRC1Q96CG8 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
CTHRC1Q96CG8 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CTHRC1Q96CG8 EDA-201ENST00000338901 1233 ntBASIC20.39■□□□□ 0.85
CTHRC1Q96CG8 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTHRC1Q96CG8 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CTHRC1Q96CG8 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.39■□□□□ 0.85
CTHRC1Q96CG8 AP005435.1-201ENST00000529293 1178 ntBASIC20.39■□□□□ 0.85
CTHRC1Q96CG8 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.39■□□□□ 0.85
CTHRC1Q96CG8 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.39■□□□□ 0.85
CTHRC1Q96CG8 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTHRC1Q96CG8 AL117328.2-201ENST00000624617 1940 ntBASIC20.39■□□□□ 0.85
CTHRC1Q96CG8 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTHRC1Q96CG8 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTHRC1Q96CG8 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTHRC1Q96CG8 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 AL031432.3-201ENST00000607698 485 ntBASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTHRC1Q96CG8 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 AC233992.3-201ENST00000607491 485 ntBASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 AC080038.3-201ENST00000623346 1952 ntBASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 AC242852.2-201ENST00000615738 1807 ntBASIC20.37■□□□□ 0.85
CTHRC1Q96CG8 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTHRC1Q96CG8 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTHRC1Q96CG8 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTHRC1Q96CG8 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTHRC1Q96CG8 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CTHRC1Q96CG8 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.36■□□□□ 0.85
CTHRC1Q96CG8 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.36■□□□□ 0.85
CTHRC1Q96CG8 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CTHRC1Q96CG8 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.36■□□□□ 0.85
CTHRC1Q96CG8 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CTHRC1Q96CG8 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTHRC1Q96CG8 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.36■□□□□ 0.85
CTHRC1Q96CG8 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 MIR638-201ENST00000385237 100 ntBASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 AL355001.2-201ENST00000620617 1191 ntBASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 ECEL1P1-201ENST00000373592 1742 ntBASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.35■□□□□ 0.85
CTHRC1Q96CG8 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms