Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28AQ8IWP9 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28AQ8IWP9 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
CCDC28AQ8IWP9 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
CCDC28AQ8IWP9 COMT-203ENST00000403184 2217 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC28AQ8IWP9 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28AQ8IWP9 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CCDC28AQ8IWP9 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CCDC28AQ8IWP9 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28AQ8IWP9 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28AQ8IWP9 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28AQ8IWP9 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28AQ8IWP9 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28AQ8IWP9 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 CHST11-202ENST00000546689 756 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 DUX4L13-201ENST00000554103 1267 ntBASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 DUX4L15-201ENST00000611059 1267 ntBASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 DUX4L23-201ENST00000615195 1269 ntBASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 DUX4L24-201ENST00000617576 1269 ntBASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 DUX4L22-201ENST00000618238 1269 ntBASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 DUX4L20-201ENST00000619712 1269 ntBASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 DUX4L21-201ENST00000622058 1269 ntBASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 DUX4L10-201ENST00000622460 1267 ntBASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 DUX4L25-201ENST00000624915 1269 ntBASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC28AQ8IWP9 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 ABHD17AP4-201ENST00000411545 909 ntBASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 DUX4L11-201ENST00000611504 1267 ntBASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 DUX4L12-201ENST00000614593 1267 ntBASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 DUX4L14-201ENST00000621227 1267 ntBASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28AQ8IWP9 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28AQ8IWP9 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC28AQ8IWP9 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28AQ8IWP9 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC28AQ8IWP9 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CCDC28AQ8IWP9 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28AQ8IWP9 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28AQ8IWP9 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28AQ8IWP9 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
CCDC28AQ8IWP9 AC139530.1-201ENST00000575312 1977 ntBASIC18.19■□□□□ 0.5
CCDC28AQ8IWP9 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 AGPS-202ENST00000409888 815 ntTSL 4 BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 FAM99A-202ENST00000538190 1989 ntBASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms