Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NUDCD3Q8IVD9 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
NUDCD3Q8IVD9 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.73■■□□□ 1.07
NUDCD3Q8IVD9 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
NUDCD3Q8IVD9 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NUDCD3Q8IVD9 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUDCD3Q8IVD9 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUDCD3Q8IVD9 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.72■■□□□ 1.07
NUDCD3Q8IVD9 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUDCD3Q8IVD9 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUDCD3Q8IVD9 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUDCD3Q8IVD9 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUDCD3Q8IVD9 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUDCD3Q8IVD9 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.72■■□□□ 1.07
NUDCD3Q8IVD9 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NUDCD3Q8IVD9 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.72■■□□□ 1.07
NUDCD3Q8IVD9 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUDCD3Q8IVD9 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
NUDCD3Q8IVD9 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NUDCD3Q8IVD9 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.71■■□□□ 1.07
NUDCD3Q8IVD9 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NUDCD3Q8IVD9 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.71■■□□□ 1.07
NUDCD3Q8IVD9 SNX5-217ENST00000606557 1087 ntBASIC21.71■■□□□ 1.07
NUDCD3Q8IVD9 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NUDCD3Q8IVD9 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.71■■□□□ 1.07
NUDCD3Q8IVD9 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
NUDCD3Q8IVD9 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
NUDCD3Q8IVD9 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.7■■□□□ 1.06
NUDCD3Q8IVD9 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NUDCD3Q8IVD9 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.7■■□□□ 1.06
NUDCD3Q8IVD9 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.7■■□□□ 1.06
NUDCD3Q8IVD9 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.7■■□□□ 1.06
NUDCD3Q8IVD9 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NUDCD3Q8IVD9 LINC01960-201ENST00000563759 1884 ntBASIC21.7■■□□□ 1.06
NUDCD3Q8IVD9 FP325331.1-202ENST00000623531 1380 ntBASIC21.7■■□□□ 1.06
NUDCD3Q8IVD9 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
NUDCD3Q8IVD9 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
NUDCD3Q8IVD9 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
NUDCD3Q8IVD9 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.69■■□□□ 1.06
NUDCD3Q8IVD9 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.69■■□□□ 1.06
NUDCD3Q8IVD9 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NUDCD3Q8IVD9 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.69■■□□□ 1.06
NUDCD3Q8IVD9 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NUDCD3Q8IVD9 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.69■■□□□ 1.06
NUDCD3Q8IVD9 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NUDCD3Q8IVD9 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NUDCD3Q8IVD9 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NUDCD3Q8IVD9 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
NUDCD3Q8IVD9 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NUDCD3Q8IVD9 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NUDCD3Q8IVD9 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.68■■□□□ 1.06
NUDCD3Q8IVD9 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.68■■□□□ 1.06
NUDCD3Q8IVD9 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NUDCD3Q8IVD9 NTF6A-201ENST00000591175 560 ntBASIC21.68■■□□□ 1.06
NUDCD3Q8IVD9 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.68■■□□□ 1.06
NUDCD3Q8IVD9 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
NUDCD3Q8IVD9 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
NUDCD3Q8IVD9 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.68■■□□□ 1.06
NUDCD3Q8IVD9 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NUDCD3Q8IVD9 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
NUDCD3Q8IVD9 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.67■■□□□ 1.06
NUDCD3Q8IVD9 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.67■■□□□ 1.06
NUDCD3Q8IVD9 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NUDCD3Q8IVD9 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
NUDCD3Q8IVD9 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.67■■□□□ 1.06
NUDCD3Q8IVD9 AC010980.1-201ENST00000587192 1142 ntBASIC21.67■■□□□ 1.06
NUDCD3Q8IVD9 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NUDCD3Q8IVD9 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NUDCD3Q8IVD9 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
NUDCD3Q8IVD9 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NUDCD3Q8IVD9 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NUDCD3Q8IVD9 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NUDCD3Q8IVD9 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.66■■□□□ 1.06
NUDCD3Q8IVD9 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.66■■□□□ 1.06
NUDCD3Q8IVD9 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NUDCD3Q8IVD9 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NUDCD3Q8IVD9 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NUDCD3Q8IVD9 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
NUDCD3Q8IVD9 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
NUDCD3Q8IVD9 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NUDCD3Q8IVD9 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NUDCD3Q8IVD9 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NUDCD3Q8IVD9 AC004987.1-201ENST00000428627 508 ntBASIC21.65■■□□□ 1.06
NUDCD3Q8IVD9 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NUDCD3Q8IVD9 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NUDCD3Q8IVD9 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
NUDCD3Q8IVD9 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
NUDCD3Q8IVD9 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.65■■□□□ 1.06
NUDCD3Q8IVD9 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
NUDCD3Q8IVD9 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
NUDCD3Q8IVD9 ATP5G2P3-201ENST00000429083 425 ntBASIC21.64■■□□□ 1.05
NUDCD3Q8IVD9 ABHD17AP5-201ENST00000580133 923 ntBASIC21.64■■□□□ 1.05
NUDCD3Q8IVD9 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NUDCD3Q8IVD9 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.64■■□□□ 1.05
NUDCD3Q8IVD9 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NUDCD3Q8IVD9 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.64■■□□□ 1.05
NUDCD3Q8IVD9 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NUDCD3Q8IVD9 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
NUDCD3Q8IVD9 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
NUDCD3Q8IVD9 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms