Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PRKDCP78527 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PRKDCP78527 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC16.16■□□□□ 0.18
PRKDCP78527 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
PRKDCP78527 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PRKDCP78527 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PRKDCP78527 STX4-202ENST00000394998 1498 ntTSL 2 BASIC16.16■□□□□ 0.18
PRKDCP78527 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PRKDCP78527 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
PRKDCP78527 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PRKDCP78527 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC16.16■□□□□ 0.18
PRKDCP78527 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PRKDCP78527 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PRKDCP78527 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKDCP78527 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC16.15■□□□□ 0.18
PRKDCP78527 AC104187.1-201ENST00000607510 612 ntBASIC16.15■□□□□ 0.18
PRKDCP78527 SHF-207ENST00000560540 2062 ntTSL 5 BASIC16.15■□□□□ 0.18
PRKDCP78527 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PRKDCP78527 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PRKDCP78527 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC16.15■□□□□ 0.18
PRKDCP78527 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
PRKDCP78527 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC16.15■□□□□ 0.18
PRKDCP78527 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC16.15■□□□□ 0.18
PRKDCP78527 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
PRKDCP78527 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.15■□□□□ 0.18
PRKDCP78527 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKDCP78527 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
PRKDCP78527 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PRKDCP78527 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC16.14■□□□□ 0.17
PRKDCP78527 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.14■□□□□ 0.17
PRKDCP78527 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC16.14■□□□□ 0.17
PRKDCP78527 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PRKDCP78527 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC16.14■□□□□ 0.17
PRKDCP78527 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PRKDCP78527 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC16.14■□□□□ 0.17
PRKDCP78527 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC16.14■□□□□ 0.17
PRKDCP78527 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PRKDCP78527 ST7-205ENST00000393446 2114 ntTSL 5 BASIC16.14■□□□□ 0.17
PRKDCP78527 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PRKDCP78527 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PRKDCP78527 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC16.14■□□□□ 0.17
PRKDCP78527 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC16.14■□□□□ 0.17
PRKDCP78527 MIR4758-201ENST00000577688 71 ntBASIC16.14■□□□□ 0.17
PRKDCP78527 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
PRKDCP78527 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
PRKDCP78527 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
PRKDCP78527 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.13■□□□□ 0.17
PRKDCP78527 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC16.13■□□□□ 0.17
PRKDCP78527 BX088651.1-201ENST00000540551 451 ntBASIC16.13■□□□□ 0.17
PRKDCP78527 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC16.13■□□□□ 0.17
PRKDCP78527 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
PRKDCP78527 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKDCP78527 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PRKDCP78527 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKDCP78527 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PRKDCP78527 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.13■□□□□ 0.17
PRKDCP78527 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKDCP78527 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKDCP78527 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC16.13■□□□□ 0.17
PRKDCP78527 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC16.13■□□□□ 0.17
PRKDCP78527 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC16.13■□□□□ 0.17
PRKDCP78527 PKM-203ENST00000389093 2279 ntTSL 5 BASIC16.13■□□□□ 0.17
PRKDCP78527 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKDCP78527 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKDCP78527 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKDCP78527 PARP1-202ENST00000366792 553 ntTSL 3 BASIC16.13■□□□□ 0.17
PRKDCP78527 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC16.13■□□□□ 0.17
PRKDCP78527 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PRKDCP78527 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PRKDCP78527 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PRKDCP78527 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.12■□□□□ 0.17
PRKDCP78527 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PRKDCP78527 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PRKDCP78527 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC16.12■□□□□ 0.17
PRKDCP78527 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC16.12■□□□□ 0.17
PRKDCP78527 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PRKDCP78527 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PRKDCP78527 AC007322.4-201ENST00000509611 723 ntBASIC16.12■□□□□ 0.17
PRKDCP78527 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC16.11■□□□□ 0.17
PRKDCP78527 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC16.11■□□□□ 0.17
PRKDCP78527 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.11■□□□□ 0.17
PRKDCP78527 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC16.11■□□□□ 0.17
PRKDCP78527 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC16.11■□□□□ 0.17
PRKDCP78527 INO80E-214ENST00000620599 515 ntTSL 2 BASIC16.11■□□□□ 0.17
PRKDCP78527 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKDCP78527 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC16.11■□□□□ 0.17
PRKDCP78527 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKDCP78527 CYP2T1P-201ENST00000432607 1285 ntBASIC16.11■□□□□ 0.17
PRKDCP78527 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PRKDCP78527 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC16.11■□□□□ 0.17
PRKDCP78527 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKDCP78527 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKDCP78527 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKDCP78527 AC026366.1-201ENST00000488803 879 ntBASIC16.11■□□□□ 0.17
PRKDCP78527 AC079140.4-201ENST00000507448 529 ntBASIC16.11■□□□□ 0.17
PRKDCP78527 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC16.1■□□□□ 0.17
PRKDCP78527 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.1■□□□□ 0.17
PRKDCP78527 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC16.1■□□□□ 0.17
PRKDCP78527 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PRKDCP78527 KRT18P21-201ENST00000515767 1272 ntBASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms