Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.61■■□□□ 1.05
SRP54P61011 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SRP54P61011 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SRP54P61011 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.6■■□□□ 1.05
SRP54P61011 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.6■■□□□ 1.05
SRP54P61011 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.6■■□□□ 1.05
SRP54P61011 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.6■■□□□ 1.05
SRP54P61011 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.6■■□□□ 1.05
SRP54P61011 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SRP54P61011 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.6■■□□□ 1.05
SRP54P61011 AC087239.1-201ENST00000622671 572 ntBASIC21.6■■□□□ 1.05
SRP54P61011 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SRP54P61011 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SRP54P61011 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SRP54P61011 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
SRP54P61011 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.59■■□□□ 1.05
SRP54P61011 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
SRP54P61011 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SRP54P61011 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.59■■□□□ 1.05
SRP54P61011 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SRP54P61011 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.59■■□□□ 1.05
SRP54P61011 DUX4L2-201ENST00000561772 1275 ntBASIC21.59■■□□□ 1.05
SRP54P61011 AC092068.2-201ENST00000590491 1708 ntBASIC21.59■■□□□ 1.05
SRP54P61011 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.59■■□□□ 1.05
SRP54P61011 DUX4L6-201ENST00000626483 1275 ntBASIC21.59■■□□□ 1.05
SRP54P61011 DUX4L1-201ENST00000627662 1275 ntBASIC21.59■■□□□ 1.05
SRP54P61011 DUX4L8-201ENST00000629013 1275 ntBASIC21.59■■□□□ 1.05
SRP54P61011 DUX4L3-201ENST00000630187 1275 ntBASIC21.59■■□□□ 1.05
SRP54P61011 DUX4L7-201ENST00000630678 1275 ntBASIC21.59■■□□□ 1.05
SRP54P61011 DUX4L5-201ENST00000630834 1275 ntBASIC21.59■■□□□ 1.05
SRP54P61011 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SRP54P61011 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SRP54P61011 LINC02228-203ENST00000641970 1355 ntBASIC21.59■■□□□ 1.05
SRP54P61011 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
SRP54P61011 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SRP54P61011 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
SRP54P61011 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.58■■□□□ 1.05
SRP54P61011 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SRP54P61011 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.58■■□□□ 1.05
SRP54P61011 AC010141.3-201ENST00000456659 717 ntBASIC21.58■■□□□ 1.05
SRP54P61011 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SRP54P61011 CCDC92B-201ENST00000575506 885 ntBASIC21.58■■□□□ 1.05
SRP54P61011 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
SRP54P61011 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SRP54P61011 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SRP54P61011 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SRP54P61011 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
SRP54P61011 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SRP54P61011 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
SRP54P61011 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SRP54P61011 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SRP54P61011 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.57■■□□□ 1.04
SRP54P61011 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SRP54P61011 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.57■■□□□ 1.04
SRP54P61011 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.57■■□□□ 1.04
SRP54P61011 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SRP54P61011 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.57■■□□□ 1.04
SRP54P61011 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SRP54P61011 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.56■■□□□ 1.04
SRP54P61011 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
SRP54P61011 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.56■■□□□ 1.04
SRP54P61011 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
SRP54P61011 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.56■■□□□ 1.04
SRP54P61011 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
SRP54P61011 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SRP54P61011 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SRP54P61011 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.56■■□□□ 1.04
SRP54P61011 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
SRP54P61011 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.56■■□□□ 1.04
SRP54P61011 KRT18P5-201ENST00000436075 1291 ntBASIC21.56■■□□□ 1.04
SRP54P61011 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.56■■□□□ 1.04
SRP54P61011 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
SRP54P61011 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SRP54P61011 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
SRP54P61011 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SRP54P61011 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.55■■□□□ 1.04
SRP54P61011 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
SRP54P61011 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.55■■□□□ 1.04
SRP54P61011 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SRP54P61011 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SRP54P61011 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.55■■□□□ 1.04
SRP54P61011 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SRP54P61011 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.55■■□□□ 1.04
SRP54P61011 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.55■■□□□ 1.04
SRP54P61011 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SRP54P61011 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
SRP54P61011 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.55■■□□□ 1.04
SRP54P61011 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
SRP54P61011 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.55■■□□□ 1.04
SRP54P61011 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.55■■□□□ 1.04
SRP54P61011 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
SRP54P61011 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
SRP54P61011 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.54■■□□□ 1.04
SRP54P61011 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SRP54P61011 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.54■■□□□ 1.04
SRP54P61011 KRT18P14-201ENST00000534205 1250 ntBASIC21.54■■□□□ 1.04
SRP54P61011 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.54■■□□□ 1.04
SRP54P61011 TERF1P2-201ENST00000583350 1212 ntBASIC21.54■■□□□ 1.04
SRP54P61011 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SRP54P61011 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms