Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.54■□□□□ 0.88
SOX3P41225 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.54■□□□□ 0.88
SOX3P41225 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SOX3P41225 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SOX3P41225 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.53■□□□□ 0.88
SOX3P41225 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SOX3P41225 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SOX3P41225 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SOX3P41225 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SOX3P41225 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SOX3P41225 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.53■□□□□ 0.88
SOX3P41225 MIR939-201ENST00000401314 82 ntBASIC20.53■□□□□ 0.88
SOX3P41225 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.53■□□□□ 0.88
SOX3P41225 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SOX3P41225 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.53■□□□□ 0.88
SOX3P41225 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SOX3P41225 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SOX3P41225 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SOX3P41225 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SOX3P41225 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SOX3P41225 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.53■□□□□ 0.88
SOX3P41225 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SOX3P41225 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SOX3P41225 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX3P41225 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SOX3P41225 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX3P41225 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX3P41225 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SOX3P41225 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.52■□□□□ 0.88
SOX3P41225 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SOX3P41225 AL136967.2-201ENST00000623968 743 ntBASIC20.52■□□□□ 0.88
SOX3P41225 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.52■□□□□ 0.88
SOX3P41225 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SOX3P41225 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.52■□□□□ 0.87
SOX3P41225 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SOX3P41225 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SOX3P41225 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SOX3P41225 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.51■□□□□ 0.87
SOX3P41225 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.51■□□□□ 0.87
SOX3P41225 AC008764.7-201ENST00000593779 1081 ntBASIC20.51■□□□□ 0.87
SOX3P41225 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.51■□□□□ 0.87
SOX3P41225 AL499627.2-201ENST00000606283 725 ntBASIC20.51■□□□□ 0.87
SOX3P41225 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SOX3P41225 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SOX3P41225 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SOX3P41225 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SOX3P41225 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.51■□□□□ 0.87
SOX3P41225 AC133637.1-201ENST00000624115 1537 ntBASIC20.51■□□□□ 0.87
SOX3P41225 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SOX3P41225 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.51■□□□□ 0.87
SOX3P41225 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SOX3P41225 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SOX3P41225 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.5■□□□□ 0.87
SOX3P41225 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SOX3P41225 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
SOX3P41225 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.5■□□□□ 0.87
SOX3P41225 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SOX3P41225 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SOX3P41225 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SOX3P41225 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SOX3P41225 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SOX3P41225 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
SOX3P41225 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.49■□□□□ 0.87
SOX3P41225 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SOX3P41225 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SOX3P41225 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SOX3P41225 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SOX3P41225 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
SOX3P41225 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SOX3P41225 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SOX3P41225 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SOX3P41225 AC091305.1-201ENST00000479476 895 ntBASIC20.49■□□□□ 0.87
SOX3P41225 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.49■□□□□ 0.87
SOX3P41225 AC027682.1-201ENST00000562846 899 ntBASIC20.49■□□□□ 0.87
SOX3P41225 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.49■□□□□ 0.87
SOX3P41225 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.49■□□□□ 0.87
SOX3P41225 LINC00526-201ENST00000581067 1875 ntBASIC20.49■□□□□ 0.87
SOX3P41225 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SOX3P41225 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SOX3P41225 DUSP8P3-201ENST00000399571 1760 ntBASIC20.49■□□□□ 0.87
SOX3P41225 GUSBP5-202ENST00000510805 1989 ntBASIC20.48■□□□□ 0.87
SOX3P41225 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SOX3P41225 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SOX3P41225 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SOX3P41225 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SOX3P41225 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.48■□□□□ 0.87
SOX3P41225 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SOX3P41225 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.48■□□□□ 0.87
SOX3P41225 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SOX3P41225 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SOX3P41225 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.48■□□□□ 0.87
SOX3P41225 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SOX3P41225 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.47■□□□□ 0.87
SOX3P41225 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
SOX3P41225 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SOX3P41225 AL353803.4-201ENST00000565882 1934 ntBASIC20.47■□□□□ 0.87
SOX3P41225 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SOX3P41225 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.47■□□□□ 0.87
SOX3P41225 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.47■□□□□ 0.87
SOX3P41225 AC099791.1-201ENST00000416440 715 ntBASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms