Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.8■■□□□ 1.08
XRCC1P18887 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.8■■□□□ 1.08
XRCC1P18887 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC1P18887 AC144652.1-201ENST00000609974 1624 ntBASIC21.8■■□□□ 1.08
XRCC1P18887 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC1P18887 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC1P18887 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC1P18887 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
XRCC1P18887 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
XRCC1P18887 AC127496.7-201ENST00000625110 1798 ntBASIC21.79■■□□□ 1.08
XRCC1P18887 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
XRCC1P18887 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.79■■□□□ 1.08
XRCC1P18887 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
XRCC1P18887 AP001330.3-201ENST00000520123 633 ntBASIC21.79■■□□□ 1.08
XRCC1P18887 DUX4L4-201ENST00000566884 1269 ntBASIC21.79■■□□□ 1.08
XRCC1P18887 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.79■■□□□ 1.08
XRCC1P18887 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
XRCC1P18887 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.79■■□□□ 1.08
XRCC1P18887 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
XRCC1P18887 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
XRCC1P18887 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
XRCC1P18887 AC137767.1-201ENST00000602918 1920 ntBASIC21.78■■□□□ 1.08
XRCC1P18887 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
XRCC1P18887 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
XRCC1P18887 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
XRCC1P18887 ECEL1P1-201ENST00000373592 1742 ntBASIC21.78■■□□□ 1.08
XRCC1P18887 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
XRCC1P18887 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.78■■□□□ 1.08
XRCC1P18887 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
XRCC1P18887 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.78■■□□□ 1.08
XRCC1P18887 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
XRCC1P18887 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.78■■□□□ 1.08
XRCC1P18887 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.78■■□□□ 1.08
XRCC1P18887 AF213884.3-201ENST00000563833 479 ntBASIC21.78■■□□□ 1.08
XRCC1P18887 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.78■■□□□ 1.08
XRCC1P18887 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
XRCC1P18887 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.78■■□□□ 1.08
XRCC1P18887 AC007375.3-201ENST00000600936 2314 ntBASIC21.78■■□□□ 1.08
XRCC1P18887 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.77■■□□□ 1.08
XRCC1P18887 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC1P18887 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC1P18887 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC1P18887 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC1P18887 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC1P18887 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC1P18887 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC1P18887 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.77■■□□□ 1.08
XRCC1P18887 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC1P18887 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC1P18887 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC1P18887 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC1P18887 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.77■■□□□ 1.08
XRCC1P18887 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC1P18887 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
XRCC1P18887 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
XRCC1P18887 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
XRCC1P18887 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.76■■□□□ 1.07
XRCC1P18887 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
XRCC1P18887 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
XRCC1P18887 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
XRCC1P18887 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
XRCC1P18887 AC091305.1-201ENST00000479476 895 ntBASIC21.76■■□□□ 1.07
XRCC1P18887 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.76■■□□□ 1.07
XRCC1P18887 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.76■■□□□ 1.07
XRCC1P18887 AL499627.2-201ENST00000606283 725 ntBASIC21.76■■□□□ 1.07
XRCC1P18887 LINC01529-204ENST00000636474 1715 ntBASIC21.76■■□□□ 1.07
XRCC1P18887 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
XRCC1P18887 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
XRCC1P18887 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
XRCC1P18887 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
XRCC1P18887 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
XRCC1P18887 RASA4CP-201ENST00000424092 1398 ntBASIC21.75■■□□□ 1.07
XRCC1P18887 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.75■■□□□ 1.07
XRCC1P18887 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
XRCC1P18887 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
XRCC1P18887 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.75■■□□□ 1.07
XRCC1P18887 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.75■■□□□ 1.07
XRCC1P18887 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
XRCC1P18887 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.75■■□□□ 1.07
XRCC1P18887 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
XRCC1P18887 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.75■■□□□ 1.07
XRCC1P18887 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
XRCC1P18887 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
XRCC1P18887 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
XRCC1P18887 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
XRCC1P18887 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
XRCC1P18887 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
XRCC1P18887 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.74■■□□□ 1.07
XRCC1P18887 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.74■■□□□ 1.07
XRCC1P18887 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
XRCC1P18887 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
XRCC1P18887 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
XRCC1P18887 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.74■■□□□ 1.07
XRCC1P18887 AC027682.1-201ENST00000562846 899 ntBASIC21.74■■□□□ 1.07
XRCC1P18887 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
XRCC1P18887 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
XRCC1P18887 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
XRCC1P18887 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
XRCC1P18887 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.73■■□□□ 1.07
XRCC1P18887 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms