Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
TPM1P09493 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
TPM1P09493 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
TPM1P09493 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
TPM1P09493 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC24.04■■□□□ 1.44
TPM1P09493 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC24.04■■□□□ 1.44
TPM1P09493 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
TPM1P09493 BEX3-202ENST00000372634 753 ntTSL 2 BASIC24.04■■□□□ 1.44
TPM1P09493 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
TPM1P09493 PVT1_1.1-201ENST00000615125 194 ntBASIC24.04■■□□□ 1.44
TPM1P09493 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
TPM1P09493 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
TPM1P09493 LINC01529-204ENST00000636474 1715 ntBASIC24.04■■□□□ 1.44
TPM1P09493 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC24.04■■□□□ 1.44
TPM1P09493 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
TPM1P09493 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
TPM1P09493 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TPM1P09493 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TPM1P09493 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC24.03■■□□□ 1.44
TPM1P09493 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
TPM1P09493 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TPM1P09493 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TPM1P09493 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
TPM1P09493 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TPM1P09493 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TPM1P09493 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC24.03■■□□□ 1.44
TPM1P09493 ATP5G2P3-201ENST00000429083 425 ntBASIC24.03■■□□□ 1.44
TPM1P09493 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC24.03■■□□□ 1.44
TPM1P09493 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TPM1P09493 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
TPM1P09493 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TPM1P09493 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
TPM1P09493 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TPM1P09493 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
TPM1P09493 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC24.02■■□□□ 1.44
TPM1P09493 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
TPM1P09493 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
TPM1P09493 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC24.02■■□□□ 1.44
TPM1P09493 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
TPM1P09493 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC24.02■■□□□ 1.44
TPM1P09493 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC24.02■■□□□ 1.44
TPM1P09493 AC010980.1-201ENST00000587192 1142 ntBASIC24.02■■□□□ 1.44
TPM1P09493 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC24.02■■□□□ 1.44
TPM1P09493 SNX5-217ENST00000606557 1087 ntBASIC24.02■■□□□ 1.44
TPM1P09493 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
TPM1P09493 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC24.02■■□□□ 1.44
TPM1P09493 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
TPM1P09493 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
TPM1P09493 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
TPM1P09493 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC24.01■■□□□ 1.43
TPM1P09493 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
TPM1P09493 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC24.01■■□□□ 1.43
TPM1P09493 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
TPM1P09493 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC24.01■■□□□ 1.43
TPM1P09493 AC004987.1-201ENST00000428627 508 ntBASIC24.01■■□□□ 1.43
TPM1P09493 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC24.01■■□□□ 1.43
TPM1P09493 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
TPM1P09493 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
TPM1P09493 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
TPM1P09493 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC24■■□□□ 1.43
TPM1P09493 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
TPM1P09493 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
TPM1P09493 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
TPM1P09493 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC24■■□□□ 1.43
TPM1P09493 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC23.99■■□□□ 1.43
TPM1P09493 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
TPM1P09493 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
TPM1P09493 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
TPM1P09493 BRD4-212ENST00000630599 726 ntTSL 2 BASIC23.99■■□□□ 1.43
TPM1P09493 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
TPM1P09493 FP325331.1-202ENST00000623531 1380 ntBASIC23.99■■□□□ 1.43
TPM1P09493 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC23.99■■□□□ 1.43
TPM1P09493 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
TPM1P09493 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
TPM1P09493 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
TPM1P09493 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
TPM1P09493 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
TPM1P09493 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
TPM1P09493 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
TPM1P09493 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC23.98■■□□□ 1.43
TPM1P09493 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC23.98■■□□□ 1.43
TPM1P09493 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC23.98■■□□□ 1.43
TPM1P09493 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
TPM1P09493 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
TPM1P09493 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
TPM1P09493 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
TPM1P09493 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
TPM1P09493 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
TPM1P09493 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
TPM1P09493 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC23.97■■□□□ 1.43
TPM1P09493 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
TPM1P09493 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
TPM1P09493 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC23.97■■□□□ 1.43
TPM1P09493 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.97■■□□□ 1.43
TPM1P09493 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC23.97■■□□□ 1.43
TPM1P09493 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
TPM1P09493 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
TPM1P09493 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
TPM1P09493 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC23.96■■□□□ 1.43
TPM1P09493 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC23.96■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms