Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CD74P04233 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC18.4■□□□□ 0.54
CD74P04233 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CD74P04233 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CD74P04233 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CD74P04233 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CD74P04233 LINC01529-204ENST00000636474 1715 ntBASIC18.4■□□□□ 0.54
CD74P04233 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CD74P04233 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CD74P04233 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CD74P04233 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CD74P04233 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CD74P04233 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CD74P04233 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CD74P04233 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CD74P04233 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CD74P04233 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CD74P04233 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CD74P04233 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CD74P04233 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CD74P04233 Z98882.1-201ENST00000622160 2253 ntBASIC18.39■□□□□ 0.53
CD74P04233 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CD74P04233 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
CD74P04233 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CD74P04233 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CD74P04233 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.39■□□□□ 0.53
CD74P04233 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CD74P04233 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CD74P04233 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.38■□□□□ 0.53
CD74P04233 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CD74P04233 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CD74P04233 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CD74P04233 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CD74P04233 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CD74P04233 AC120024.1-201ENST00000562672 995 ntBASIC18.38■□□□□ 0.53
CD74P04233 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CD74P04233 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CD74P04233 RNF126P1-201ENST00000567452 1320 ntBASIC18.38■□□□□ 0.53
CD74P04233 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CD74P04233 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CD74P04233 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CD74P04233 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.38■□□□□ 0.53
CD74P04233 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CD74P04233 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CD74P04233 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CD74P04233 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CD74P04233 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CD74P04233 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CD74P04233 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CD74P04233 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.37■□□□□ 0.53
CD74P04233 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.37■□□□□ 0.53
CD74P04233 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CD74P04233 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CD74P04233 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC18.37■□□□□ 0.53
CD74P04233 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CD74P04233 MBP-237ENST00000579129 1052 ntTSL 5 BASIC18.37■□□□□ 0.53
CD74P04233 CA15P2-201ENST00000611168 834 ntBASIC18.37■□□□□ 0.53
CD74P04233 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CD74P04233 FP325331.1-202ENST00000623531 1380 ntBASIC18.37■□□□□ 0.53
CD74P04233 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CD74P04233 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
CD74P04233 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CD74P04233 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CD74P04233 LINC01521-201ENST00000504184 1943 ntBASIC18.37■□□□□ 0.53
CD74P04233 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CD74P04233 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CD74P04233 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CD74P04233 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CD74P04233 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CD74P04233 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CD74P04233 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CD74P04233 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC18.36■□□□□ 0.53
CD74P04233 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CD74P04233 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.36■□□□□ 0.53
CD74P04233 FEM1AP4-201ENST00000443167 1987 ntBASIC18.36■□□□□ 0.53
CD74P04233 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CD74P04233 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC18.36■□□□□ 0.53
CD74P04233 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CD74P04233 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CD74P04233 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.35■□□□□ 0.53
CD74P04233 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CD74P04233 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CD74P04233 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CD74P04233 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CD74P04233 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CD74P04233 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC18.35■□□□□ 0.53
CD74P04233 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CD74P04233 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CD74P04233 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CD74P04233 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CD74P04233 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CD74P04233 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.35■□□□□ 0.53
CD74P04233 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.35■□□□□ 0.53
CD74P04233 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CD74P04233 AC092667.1-201ENST00000434301 2586 ntBASIC18.35■□□□□ 0.53
CD74P04233 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CD74P04233 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CD74P04233 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC18.35■□□□□ 0.53
CD74P04233 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CD74P04233 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms