Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.43■■□□□ 1.02
VPS4BO75351 SNX5-217ENST00000606557 1087 ntBASIC21.43■■□□□ 1.02
VPS4BO75351 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VPS4BO75351 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.43■■□□□ 1.02
VPS4BO75351 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
VPS4BO75351 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VPS4BO75351 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VPS4BO75351 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.43■■□□□ 1.02
VPS4BO75351 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.43■■□□□ 1.02
VPS4BO75351 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
VPS4BO75351 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS4BO75351 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS4BO75351 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS4BO75351 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
VPS4BO75351 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
VPS4BO75351 AC135279.3-201ENST00000610945 1311 ntBASIC21.42■■□□□ 1.02
VPS4BO75351 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS4BO75351 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS4BO75351 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS4BO75351 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS4BO75351 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
VPS4BO75351 C11orf96-202ENST00000528572 1834 ntBASIC21.41■■□□□ 1.02
VPS4BO75351 PKD1P6-201ENST00000343738 4769 ntBASIC21.41■■□□□ 1.02
VPS4BO75351 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
VPS4BO75351 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS4BO75351 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
VPS4BO75351 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.41■■□□□ 1.02
VPS4BO75351 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.41■■□□□ 1.02
VPS4BO75351 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
VPS4BO75351 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.41■■□□□ 1.02
VPS4BO75351 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.41■■□□□ 1.02
VPS4BO75351 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS4BO75351 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.41■■□□□ 1.02
VPS4BO75351 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS4BO75351 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS4BO75351 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
VPS4BO75351 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.41■■□□□ 1.02
VPS4BO75351 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.41■■□□□ 1.02
VPS4BO75351 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS4BO75351 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS4BO75351 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS4BO75351 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS4BO75351 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VPS4BO75351 AC026271.2-201ENST00000428091 497 ntBASIC21.4■■□□□ 1.02
VPS4BO75351 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS4BO75351 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.4■■□□□ 1.02
VPS4BO75351 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.4■■□□□ 1.02
VPS4BO75351 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.4■■□□□ 1.02
VPS4BO75351 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS4BO75351 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS4BO75351 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.4■■□□□ 1.02
VPS4BO75351 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
VPS4BO75351 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VPS4BO75351 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VPS4BO75351 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.39■■□□□ 1.01
VPS4BO75351 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.39■■□□□ 1.01
VPS4BO75351 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.39■■□□□ 1.01
VPS4BO75351 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VPS4BO75351 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
VPS4BO75351 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VPS4BO75351 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VPS4BO75351 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS4BO75351 AC087742.1-201ENST00000575880 1738 ntBASIC21.38■■□□□ 1.01
VPS4BO75351 FP325331.1-202ENST00000623531 1380 ntBASIC21.38■■□□□ 1.01
VPS4BO75351 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS4BO75351 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.38■■□□□ 1.01
VPS4BO75351 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS4BO75351 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.38■■□□□ 1.01
VPS4BO75351 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.38■■□□□ 1.01
VPS4BO75351 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.38■■□□□ 1.01
VPS4BO75351 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VPS4BO75351 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS4BO75351 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS4BO75351 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS4BO75351 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.38■■□□□ 1.01
VPS4BO75351 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.38■■□□□ 1.01
VPS4BO75351 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.38■■□□□ 1.01
VPS4BO75351 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS4BO75351 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
VPS4BO75351 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS4BO75351 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS4BO75351 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.37■■□□□ 1.01
VPS4BO75351 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
VPS4BO75351 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS4BO75351 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS4BO75351 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS4BO75351 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS4BO75351 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS4BO75351 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.37■■□□□ 1.01
VPS4BO75351 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.37■■□□□ 1.01
VPS4BO75351 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS4BO75351 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS4BO75351 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.37■■□□□ 1.01
VPS4BO75351 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
VPS4BO75351 LINC01529-204ENST00000636474 1715 ntBASIC21.37■■□□□ 1.01
VPS4BO75351 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS4BO75351 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS4BO75351 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
VPS4BO75351 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS4BO75351 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms