Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SGCEO43556 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SGCEO43556 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SGCEO43556 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SGCEO43556 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.28■□□□□ 0.68
SGCEO43556 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.27■□□□□ 0.68
SGCEO43556 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SGCEO43556 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SGCEO43556 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SGCEO43556 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.27■□□□□ 0.68
SGCEO43556 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.27■□□□□ 0.68
SGCEO43556 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.27■□□□□ 0.68
SGCEO43556 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SGCEO43556 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SGCEO43556 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SGCEO43556 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SGCEO43556 AC131281.2-201ENST00000520478 145 ntBASIC19.27■□□□□ 0.68
SGCEO43556 MIR4466-201ENST00000606121 54 ntBASIC19.27■□□□□ 0.68
SGCEO43556 pRNA.6-201ENST00000610482 90 ntBASIC19.27■□□□□ 0.68
SGCEO43556 pRNA.5-201ENST00000612139 90 ntBASIC19.27■□□□□ 0.68
SGCEO43556 pRNA.11-201ENST00000618423 90 ntBASIC19.27■□□□□ 0.68
SGCEO43556 pRNA.13-201ENST00000619112 90 ntBASIC19.27■□□□□ 0.68
SGCEO43556 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.27■□□□□ 0.68
SGCEO43556 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SGCEO43556 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SGCEO43556 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
SGCEO43556 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SGCEO43556 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SGCEO43556 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
SGCEO43556 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SGCEO43556 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SGCEO43556 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SGCEO43556 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SGCEO43556 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SGCEO43556 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
SGCEO43556 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SGCEO43556 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SGCEO43556 AL117328.2-201ENST00000624617 1940 ntBASIC19.26■□□□□ 0.67
SGCEO43556 AC131212.1-201ENST00000613771 668 ntBASIC19.26■□□□□ 0.67
SGCEO43556 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SGCEO43556 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SGCEO43556 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SGCEO43556 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SGCEO43556 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SGCEO43556 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.25■□□□□ 0.67
SGCEO43556 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
SGCEO43556 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SGCEO43556 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
SGCEO43556 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.25■□□□□ 0.67
SGCEO43556 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SGCEO43556 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SGCEO43556 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SGCEO43556 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.25■□□□□ 0.67
SGCEO43556 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.25■□□□□ 0.67
SGCEO43556 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.25■□□□□ 0.67
SGCEO43556 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SGCEO43556 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SGCEO43556 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SGCEO43556 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SGCEO43556 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SGCEO43556 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SGCEO43556 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SGCEO43556 LINC01960-201ENST00000563759 1884 ntBASIC19.24■□□□□ 0.67
SGCEO43556 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SGCEO43556 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SGCEO43556 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SGCEO43556 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SGCEO43556 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SGCEO43556 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.24■□□□□ 0.67
SGCEO43556 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SGCEO43556 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SGCEO43556 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.24■□□□□ 0.67
SGCEO43556 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
SGCEO43556 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.24■□□□□ 0.67
SGCEO43556 AC133637.1-201ENST00000624115 1537 ntBASIC19.24■□□□□ 0.67
SGCEO43556 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SGCEO43556 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SGCEO43556 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SGCEO43556 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SGCEO43556 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SGCEO43556 GUSBP5-202ENST00000510805 1989 ntBASIC19.23■□□□□ 0.67
SGCEO43556 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SGCEO43556 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SGCEO43556 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SGCEO43556 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SGCEO43556 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.23■□□□□ 0.67
SGCEO43556 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
SGCEO43556 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SGCEO43556 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
SGCEO43556 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SGCEO43556 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SGCEO43556 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SGCEO43556 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.23■□□□□ 0.67
SGCEO43556 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SGCEO43556 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
SGCEO43556 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SGCEO43556 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.23■□□□□ 0.67
SGCEO43556 AC127496.7-201ENST00000625110 1798 ntBASIC19.22■□□□□ 0.67
SGCEO43556 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.22■□□□□ 0.67
SGCEO43556 MIR3181-201ENST00000578512 73 ntBASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms