Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
USH1CQ9Y6N9 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
USH1CQ9Y6N9 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
USH1CQ9Y6N9 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
USH1CQ9Y6N9 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
USH1CQ9Y6N9 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.83■■□□□ 1.08
USH1CQ9Y6N9 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
USH1CQ9Y6N9 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.83■■□□□ 1.08
USH1CQ9Y6N9 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
USH1CQ9Y6N9 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
USH1CQ9Y6N9 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
USH1CQ9Y6N9 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.82■■□□□ 1.08
USH1CQ9Y6N9 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USH1CQ9Y6N9 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USH1CQ9Y6N9 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
USH1CQ9Y6N9 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
USH1CQ9Y6N9 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
USH1CQ9Y6N9 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USH1CQ9Y6N9 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 AC087742.1-201ENST00000575880 1738 ntBASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 AC010542.4-201ENST00000563151 1910 ntBASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 AL353803.4-201ENST00000565882 1934 ntBASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 MIR4449-201ENST00000578365 66 ntBASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USH1CQ9Y6N9 AL121603.2-201ENST00000557373 2117 ntBASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 RNF126P1-201ENST00000567452 1320 ntBASIC21.8■■□□□ 1.08
USH1CQ9Y6N9 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.79■■□□□ 1.08
USH1CQ9Y6N9 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
USH1CQ9Y6N9 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.79■■□□□ 1.08
USH1CQ9Y6N9 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USH1CQ9Y6N9 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
USH1CQ9Y6N9 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.79■■□□□ 1.08
USH1CQ9Y6N9 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USH1CQ9Y6N9 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.79■■□□□ 1.08
USH1CQ9Y6N9 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USH1CQ9Y6N9 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USH1CQ9Y6N9 AC005229.4-201ENST00000610085 2198 ntBASIC21.78■■□□□ 1.08
USH1CQ9Y6N9 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
USH1CQ9Y6N9 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USH1CQ9Y6N9 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.78■■□□□ 1.08
USH1CQ9Y6N9 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.78■■□□□ 1.08
USH1CQ9Y6N9 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
USH1CQ9Y6N9 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
USH1CQ9Y6N9 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.78■■□□□ 1.08
USH1CQ9Y6N9 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USH1CQ9Y6N9 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USH1CQ9Y6N9 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
USH1CQ9Y6N9 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.77■■□□□ 1.08
USH1CQ9Y6N9 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USH1CQ9Y6N9 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
USH1CQ9Y6N9 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.77■■□□□ 1.08
USH1CQ9Y6N9 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
USH1CQ9Y6N9 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USH1CQ9Y6N9 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.77■■□□□ 1.08
USH1CQ9Y6N9 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.77■■□□□ 1.08
USH1CQ9Y6N9 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
USH1CQ9Y6N9 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.77■■□□□ 1.08
USH1CQ9Y6N9 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USH1CQ9Y6N9 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USH1CQ9Y6N9 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.76■■□□□ 1.07
USH1CQ9Y6N9 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USH1CQ9Y6N9 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USH1CQ9Y6N9 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USH1CQ9Y6N9 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USH1CQ9Y6N9 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USH1CQ9Y6N9 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.76■■□□□ 1.07
USH1CQ9Y6N9 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USH1CQ9Y6N9 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
USH1CQ9Y6N9 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.75■■□□□ 1.07
USH1CQ9Y6N9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.75■■□□□ 1.07
USH1CQ9Y6N9 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
USH1CQ9Y6N9 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.75■■□□□ 1.07
USH1CQ9Y6N9 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
USH1CQ9Y6N9 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
USH1CQ9Y6N9 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms