Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHB3Q9Y5E6 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.46■■□□□ 1.03
PCDHB3Q9Y5E6 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.46■■□□□ 1.03
PCDHB3Q9Y5E6 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHB3Q9Y5E6 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.46■■□□□ 1.03
PCDHB3Q9Y5E6 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
PCDHB3Q9Y5E6 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.46■■□□□ 1.03
PCDHB3Q9Y5E6 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHB3Q9Y5E6 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
PCDHB3Q9Y5E6 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 AC009086.3-201ENST00000623486 1008 ntBASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 ECEL1P1-201ENST00000373592 1742 ntBASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.45■■□□□ 1.02
PCDHB3Q9Y5E6 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHB3Q9Y5E6 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHB3Q9Y5E6 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHB3Q9Y5E6 AC127496.7-201ENST00000625110 1798 ntBASIC21.44■■□□□ 1.02
PCDHB3Q9Y5E6 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHB3Q9Y5E6 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHB3Q9Y5E6 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDHB3Q9Y5E6 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.44■■□□□ 1.02
PCDHB3Q9Y5E6 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDHB3Q9Y5E6 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.44■■□□□ 1.02
PCDHB3Q9Y5E6 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHB3Q9Y5E6 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHB3Q9Y5E6 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDHB3Q9Y5E6 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDHB3Q9Y5E6 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 RASA4CP-201ENST00000424092 1398 ntBASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHB3Q9Y5E6 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHB3Q9Y5E6 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.42■■□□□ 1.02
PCDHB3Q9Y5E6 AC006455.2-201ENST00000429931 906 ntBASIC21.42■■□□□ 1.02
PCDHB3Q9Y5E6 AC027682.1-201ENST00000562846 899 ntBASIC21.42■■□□□ 1.02
PCDHB3Q9Y5E6 AC136469.2-201ENST00000623944 1028 ntBASIC21.42■■□□□ 1.02
PCDHB3Q9Y5E6 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHB3Q9Y5E6 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
PCDHB3Q9Y5E6 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.41■■□□□ 1.02
PCDHB3Q9Y5E6 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHB3Q9Y5E6 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHB3Q9Y5E6 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHB3Q9Y5E6 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
PCDHB3Q9Y5E6 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
PCDHB3Q9Y5E6 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHB3Q9Y5E6 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.41■■□□□ 1.02
PCDHB3Q9Y5E6 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHB3Q9Y5E6 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
PCDHB3Q9Y5E6 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHB3Q9Y5E6 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHB3Q9Y5E6 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHB3Q9Y5E6 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHB3Q9Y5E6 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
PCDHB3Q9Y5E6 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.4■■□□□ 1.02
PCDHB3Q9Y5E6 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
PCDHB3Q9Y5E6 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHB3Q9Y5E6 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHB3Q9Y5E6 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.4■■□□□ 1.02
PCDHB3Q9Y5E6 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.4■■□□□ 1.02
PCDHB3Q9Y5E6 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.4■■□□□ 1.02
PCDHB3Q9Y5E6 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
PCDHB3Q9Y5E6 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHB3Q9Y5E6 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PCDHB3Q9Y5E6 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
PCDHB3Q9Y5E6 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
PCDHB3Q9Y5E6 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.39■■□□□ 1.02
PCDHB3Q9Y5E6 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PCDHB3Q9Y5E6 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHB3Q9Y5E6 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
PCDHB3Q9Y5E6 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.39■■□□□ 1.01
PCDHB3Q9Y5E6 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.39■■□□□ 1.01
PCDHB3Q9Y5E6 MIR3181-201ENST00000578512 73 ntBASIC21.39■■□□□ 1.01
PCDHB3Q9Y5E6 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.39■■□□□ 1.01
PCDHB3Q9Y5E6 CA15P2-201ENST00000611168 834 ntBASIC21.39■■□□□ 1.01
PCDHB3Q9Y5E6 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms