Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4BQ9Y4P1 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.81■□□□□ 0.92
ATG4BQ9Y4P1 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4BQ9Y4P1 UNC93B3-201ENST00000308076 687 ntBASIC20.81■□□□□ 0.92
ATG4BQ9Y4P1 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.81■□□□□ 0.92
ATG4BQ9Y4P1 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.81■□□□□ 0.92
ATG4BQ9Y4P1 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4BQ9Y4P1 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4BQ9Y4P1 LINC01960-201ENST00000563759 1884 ntBASIC20.81■□□□□ 0.92
ATG4BQ9Y4P1 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.81■□□□□ 0.92
ATG4BQ9Y4P1 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
ATG4BQ9Y4P1 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.8■□□□□ 0.92
ATG4BQ9Y4P1 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.8■□□□□ 0.92
ATG4BQ9Y4P1 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4BQ9Y4P1 ESRRAP2-201ENST00000418437 1549 ntBASIC20.8■□□□□ 0.92
ATG4BQ9Y4P1 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4BQ9Y4P1 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.8■□□□□ 0.92
ATG4BQ9Y4P1 AC011298.3-201ENST00000615796 283 ntBASIC20.8■□□□□ 0.92
ATG4BQ9Y4P1 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4BQ9Y4P1 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4BQ9Y4P1 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4BQ9Y4P1 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4BQ9Y4P1 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4BQ9Y4P1 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4BQ9Y4P1 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4BQ9Y4P1 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4BQ9Y4P1 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
ATG4BQ9Y4P1 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
ATG4BQ9Y4P1 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4BQ9Y4P1 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.78■□□□□ 0.92
ATG4BQ9Y4P1 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
ATG4BQ9Y4P1 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4BQ9Y4P1 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.78■□□□□ 0.92
ATG4BQ9Y4P1 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4BQ9Y4P1 AC136469.2-201ENST00000623944 1028 ntBASIC20.78■□□□□ 0.92
ATG4BQ9Y4P1 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4BQ9Y4P1 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4BQ9Y4P1 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
ATG4BQ9Y4P1 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4BQ9Y4P1 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 AC096631.2-201ENST00000436136 790 ntBASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 AL139246.5-201ENST00000606645 996 ntBASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4BQ9Y4P1 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
ATG4BQ9Y4P1 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.77■□□□□ 0.91
ATG4BQ9Y4P1 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4BQ9Y4P1 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4BQ9Y4P1 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4BQ9Y4P1 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4BQ9Y4P1 AL136162.1-201ENST00000607711 1078 ntBASIC20.76■□□□□ 0.91
ATG4BQ9Y4P1 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.76■□□□□ 0.91
ATG4BQ9Y4P1 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4BQ9Y4P1 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4BQ9Y4P1 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4BQ9Y4P1 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4BQ9Y4P1 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
ATG4BQ9Y4P1 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.76■□□□□ 0.91
ATG4BQ9Y4P1 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4BQ9Y4P1 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ATG4BQ9Y4P1 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATG4BQ9Y4P1 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
ATG4BQ9Y4P1 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.75■□□□□ 0.91
ATG4BQ9Y4P1 OR2I1P-207ENST00000453522 948 ntBASIC20.75■□□□□ 0.91
ATG4BQ9Y4P1 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.75■□□□□ 0.91
ATG4BQ9Y4P1 AC024257.2-201ENST00000549699 147 ntBASIC20.75■□□□□ 0.91
ATG4BQ9Y4P1 AC110285.6-201ENST00000617652 491 ntBASIC20.75■□□□□ 0.91
ATG4BQ9Y4P1 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms