Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
USE1Q9NZ43 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.39■□□□□ 0.86
USE1Q9NZ43 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.39■□□□□ 0.86
USE1Q9NZ43 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
USE1Q9NZ43 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.39■□□□□ 0.85
USE1Q9NZ43 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.39■□□□□ 0.85
USE1Q9NZ43 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USE1Q9NZ43 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC20.39■□□□□ 0.85
USE1Q9NZ43 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.39■□□□□ 0.85
USE1Q9NZ43 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.39■□□□□ 0.85
USE1Q9NZ43 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.39■□□□□ 0.85
USE1Q9NZ43 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USE1Q9NZ43 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
USE1Q9NZ43 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USE1Q9NZ43 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USE1Q9NZ43 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USE1Q9NZ43 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USE1Q9NZ43 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.39■□□□□ 0.85
USE1Q9NZ43 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
USE1Q9NZ43 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.38■□□□□ 0.85
USE1Q9NZ43 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USE1Q9NZ43 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USE1Q9NZ43 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USE1Q9NZ43 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
USE1Q9NZ43 SPCS2P3-201ENST00000500401 656 ntBASIC20.38■□□□□ 0.85
USE1Q9NZ43 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.38■□□□□ 0.85
USE1Q9NZ43 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
USE1Q9NZ43 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USE1Q9NZ43 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.38■□□□□ 0.85
USE1Q9NZ43 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
USE1Q9NZ43 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.38■□□□□ 0.85
USE1Q9NZ43 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USE1Q9NZ43 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
USE1Q9NZ43 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
USE1Q9NZ43 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.37■□□□□ 0.85
USE1Q9NZ43 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.37■□□□□ 0.85
USE1Q9NZ43 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
USE1Q9NZ43 LONRF2P2-201ENST00000439212 571 ntBASIC20.37■□□□□ 0.85
USE1Q9NZ43 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.37■□□□□ 0.85
USE1Q9NZ43 ABHD17AP3-201ENST00000503096 1137 ntBASIC20.37■□□□□ 0.85
USE1Q9NZ43 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
USE1Q9NZ43 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
USE1Q9NZ43 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USE1Q9NZ43 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.37■□□□□ 0.85
USE1Q9NZ43 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
USE1Q9NZ43 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USE1Q9NZ43 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
USE1Q9NZ43 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.36■□□□□ 0.85
USE1Q9NZ43 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
USE1Q9NZ43 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
USE1Q9NZ43 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USE1Q9NZ43 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.36■□□□□ 0.85
USE1Q9NZ43 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USE1Q9NZ43 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
USE1Q9NZ43 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USE1Q9NZ43 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USE1Q9NZ43 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
USE1Q9NZ43 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.36■□□□□ 0.85
USE1Q9NZ43 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
USE1Q9NZ43 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
USE1Q9NZ43 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
USE1Q9NZ43 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC20.35■□□□□ 0.85
USE1Q9NZ43 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC20.35■□□□□ 0.85
USE1Q9NZ43 GPX1-201ENST00000419349 1106 ntBASIC20.35■□□□□ 0.85
USE1Q9NZ43 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.35■□□□□ 0.85
USE1Q9NZ43 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
USE1Q9NZ43 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
USE1Q9NZ43 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
USE1Q9NZ43 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
USE1Q9NZ43 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.34■□□□□ 0.85
USE1Q9NZ43 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.34■□□□□ 0.85
USE1Q9NZ43 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
USE1Q9NZ43 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
USE1Q9NZ43 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
USE1Q9NZ43 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
USE1Q9NZ43 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
USE1Q9NZ43 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
USE1Q9NZ43 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USE1Q9NZ43 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USE1Q9NZ43 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
USE1Q9NZ43 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.33■□□□□ 0.85
USE1Q9NZ43 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
USE1Q9NZ43 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.33■□□□□ 0.85
USE1Q9NZ43 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USE1Q9NZ43 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
USE1Q9NZ43 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USE1Q9NZ43 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.33■□□□□ 0.85
USE1Q9NZ43 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USE1Q9NZ43 AC005229.4-201ENST00000610085 2198 ntBASIC20.33■□□□□ 0.85
USE1Q9NZ43 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
USE1Q9NZ43 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.84
USE1Q9NZ43 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
USE1Q9NZ43 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
USE1Q9NZ43 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USE1Q9NZ43 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.32■□□□□ 0.84
USE1Q9NZ43 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USE1Q9NZ43 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC20.32■□□□□ 0.84
USE1Q9NZ43 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
USE1Q9NZ43 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.32■□□□□ 0.84
USE1Q9NZ43 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 170 ms