Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC23.56■■□□□ 1.36
ZNF560Q96MR9 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC23.56■■□□□ 1.36
ZNF560Q96MR9 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.56■■□□□ 1.36
ZNF560Q96MR9 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
ZNF560Q96MR9 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC23.56■■□□□ 1.36
ZNF560Q96MR9 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
ZNF560Q96MR9 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
ZNF560Q96MR9 MIR572-201ENST00000384983 95 ntBASIC23.55■■□□□ 1.36
ZNF560Q96MR9 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
ZNF560Q96MR9 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.55■■□□□ 1.36
ZNF560Q96MR9 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC23.55■■□□□ 1.36
ZNF560Q96MR9 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
ZNF560Q96MR9 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
ZNF560Q96MR9 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.55■■□□□ 1.36
ZNF560Q96MR9 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
ZNF560Q96MR9 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC23.55■■□□□ 1.36
ZNF560Q96MR9 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
ZNF560Q96MR9 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
ZNF560Q96MR9 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
ZNF560Q96MR9 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
ZNF560Q96MR9 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
ZNF560Q96MR9 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.54■■□□□ 1.36
ZNF560Q96MR9 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC23.54■■□□□ 1.36
ZNF560Q96MR9 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC23.53■■□□□ 1.36
ZNF560Q96MR9 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
ZNF560Q96MR9 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC23.53■■□□□ 1.36
ZNF560Q96MR9 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
ZNF560Q96MR9 AC010141.3-201ENST00000456659 717 ntBASIC23.53■■□□□ 1.36
ZNF560Q96MR9 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
ZNF560Q96MR9 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC23.53■■□□□ 1.36
ZNF560Q96MR9 DUSP8P5-201ENST00000422884 1815 ntBASIC23.53■■□□□ 1.36
ZNF560Q96MR9 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
ZNF560Q96MR9 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
ZNF560Q96MR9 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
ZNF560Q96MR9 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
ZNF560Q96MR9 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
ZNF560Q96MR9 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
ZNF560Q96MR9 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.52■■□□□ 1.36
ZNF560Q96MR9 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC23.52■■□□□ 1.36
ZNF560Q96MR9 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
ZNF560Q96MR9 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
ZNF560Q96MR9 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
ZNF560Q96MR9 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
ZNF560Q96MR9 LHPP-203ENST00000392757 840 ntTSL 3 BASIC23.51■■□□□ 1.35
ZNF560Q96MR9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC23.51■■□□□ 1.35
ZNF560Q96MR9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC23.51■■□□□ 1.35
ZNF560Q96MR9 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC23.51■■□□□ 1.35
ZNF560Q96MR9 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
ZNF560Q96MR9 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC23.5■■□□□ 1.35
ZNF560Q96MR9 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
ZNF560Q96MR9 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
ZNF560Q96MR9 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.5■■□□□ 1.35
ZNF560Q96MR9 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
ZNF560Q96MR9 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
ZNF560Q96MR9 NME4-202ENST00000382940 766 ntTSL 3 BASIC23.5■■□□□ 1.35
ZNF560Q96MR9 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
ZNF560Q96MR9 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC23.5■■□□□ 1.35
ZNF560Q96MR9 NME4-211ENST00000620944 1193 ntTSL 2 BASIC23.5■■□□□ 1.35
ZNF560Q96MR9 AL358852.1-201ENST00000623174 1268 ntBASIC23.5■■□□□ 1.35
ZNF560Q96MR9 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.5■■□□□ 1.35
ZNF560Q96MR9 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.5■■□□□ 1.35
ZNF560Q96MR9 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
ZNF560Q96MR9 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
ZNF560Q96MR9 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
ZNF560Q96MR9 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
ZNF560Q96MR9 LINC01960-201ENST00000563759 1884 ntBASIC23.49■■□□□ 1.35
ZNF560Q96MR9 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
ZNF560Q96MR9 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.49■■□□□ 1.35
ZNF560Q96MR9 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.49■■□□□ 1.35
ZNF560Q96MR9 AK1-201ENST00000223836 736 ntTSL 3 BASIC23.49■■□□□ 1.35
ZNF560Q96MR9 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
ZNF560Q96MR9 AC012414.1-201ENST00000556676 535 ntBASIC23.49■■□□□ 1.35
ZNF560Q96MR9 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC23.49■■□□□ 1.35
ZNF560Q96MR9 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC23.49■■□□□ 1.35
ZNF560Q96MR9 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
ZNF560Q96MR9 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
ZNF560Q96MR9 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.49■■□□□ 1.35
ZNF560Q96MR9 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
ZNF560Q96MR9 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
ZNF560Q96MR9 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 RARRES2P6-201ENST00000567333 442 ntBASIC23.48■■□□□ 1.35
ZNF560Q96MR9 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 AL354811.1-201ENST00000610286 706 ntBASIC23.48■■□□□ 1.35
ZNF560Q96MR9 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC23.48■■□□□ 1.35
ZNF560Q96MR9 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
ZNF560Q96MR9 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
ZNF560Q96MR9 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms