Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 APTR-203ENST00000430801 583 ntTSL 5 BASIC15.08■□□□□ 0
ALMS1Q8TCU4 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC15.08■□□□□ 0
ALMS1Q8TCU4 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC15.08■□□□□ 0
ALMS1Q8TCU4 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC15.08■□□□□ 0
ALMS1Q8TCU4 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
ALMS1Q8TCU4 AC144652.1-201ENST00000609974 1624 ntBASIC15.08■□□□□ 0
ALMS1Q8TCU4 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC15.08■□□□□ 0
ALMS1Q8TCU4 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
ALMS1Q8TCU4 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC15.08■□□□□ 0
ALMS1Q8TCU4 AF201337.1-201ENST00000520239 748 ntBASIC15.08■□□□□ 0
ALMS1Q8TCU4 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC15.08■□□□□ 0
ALMS1Q8TCU4 AC105036.2-201ENST00000569468 176 ntBASIC15.08■□□□□ 0
ALMS1Q8TCU4 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC15.08■□□□□ 0
ALMS1Q8TCU4 AC092118.2-201ENST00000613495 667 ntBASIC15.08■□□□□ 0
ALMS1Q8TCU4 ITM2C-210ENST00000620962 501 ntBASIC15.08■□□□□ 0
ALMS1Q8TCU4 EI24-211ENST00000534546 1544 ntTSL 2 BASIC15.08■□□□□ 0
ALMS1Q8TCU4 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ALMS1Q8TCU4 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC15.07■□□□□ 0
ALMS1Q8TCU4 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ALMS1Q8TCU4 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC15.07■□□□□ 0
ALMS1Q8TCU4 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC15.07■□□□□ 0
ALMS1Q8TCU4 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
ALMS1Q8TCU4 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
ALMS1Q8TCU4 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ALMS1Q8TCU4 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC15.07■□□□□ 0
ALMS1Q8TCU4 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC15.07■□□□□ 0
ALMS1Q8TCU4 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ALMS1Q8TCU4 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC15.07■□□□□ 0
ALMS1Q8TCU4 AC007322.1-201ENST00000426983 750 ntBASIC15.07■□□□□ 0
ALMS1Q8TCU4 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC15.06■□□□□ 0
ALMS1Q8TCU4 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ALMS1Q8TCU4 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ALMS1Q8TCU4 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC15.06■□□□□ 0
ALMS1Q8TCU4 RARRES2P4-201ENST00000514074 484 ntBASIC15.06■□□□□ 0
ALMS1Q8TCU4 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC15.06■□□□□ 0
ALMS1Q8TCU4 AC087239.1-201ENST00000622671 572 ntBASIC15.06■□□□□ 0
ALMS1Q8TCU4 CASP6-205ENST00000505486 538 ntTSL 4 BASIC15.06■□□□□ 0
ALMS1Q8TCU4 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC15.06■□□□□ 0
ALMS1Q8TCU4 BRI3-207ENST00000539286 699 ntTSL 2 BASIC15.06■□□□□ 0
ALMS1Q8TCU4 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC15.06■□□□□ 0
ALMS1Q8TCU4 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
ALMS1Q8TCU4 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ALMS1Q8TCU4 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
ALMS1Q8TCU4 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
ALMS1Q8TCU4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC15.05■□□□□ 0
ALMS1Q8TCU4 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC15.05■□□□□ 0
ALMS1Q8TCU4 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC15.05■□□□□ -0
ALMS1Q8TCU4 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
ALMS1Q8TCU4 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC15.05■□□□□ -0
ALMS1Q8TCU4 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC15.05■□□□□ -0
ALMS1Q8TCU4 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC15.05■□□□□ -0
ALMS1Q8TCU4 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
ALMS1Q8TCU4 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
ALMS1Q8TCU4 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC15.05■□□□□ -0
ALMS1Q8TCU4 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
ALMS1Q8TCU4 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC15.05■□□□□ -0
ALMS1Q8TCU4 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
ALMS1Q8TCU4 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
ALMS1Q8TCU4 AC079140.4-201ENST00000507448 529 ntBASIC15.04■□□□□ -0
ALMS1Q8TCU4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
ALMS1Q8TCU4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC15.04■□□□□ -0
ALMS1Q8TCU4 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
ALMS1Q8TCU4 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
ALMS1Q8TCU4 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
ALMS1Q8TCU4 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC15.04■□□□□ -0
ALMS1Q8TCU4 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC15.04■□□□□ -0
ALMS1Q8TCU4 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC15.04■□□□□ -0
ALMS1Q8TCU4 FAM201B-201ENST00000458407 597 ntBASIC15.04■□□□□ -0
ALMS1Q8TCU4 MMAB-206ENST00000540016 945 ntTSL 3 BASIC15.04■□□□□ -0
ALMS1Q8TCU4 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC15.04■□□□□ -0
ALMS1Q8TCU4 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
ALMS1Q8TCU4 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
ALMS1Q8TCU4 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ALMS1Q8TCU4 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC15.03■□□□□ -0
ALMS1Q8TCU4 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC15.03■□□□□ -0
ALMS1Q8TCU4 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC15.03■□□□□ -0
ALMS1Q8TCU4 KRT18P29-201ENST00000397031 1267 ntBASIC15.03■□□□□ -0
ALMS1Q8TCU4 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC15.03■□□□□ -0
ALMS1Q8TCU4 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC15.03■□□□□ -0
ALMS1Q8TCU4 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC15.03■□□□□ -0
ALMS1Q8TCU4 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC15.03■□□□□ -0
ALMS1Q8TCU4 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC15.03■□□□□ -0
ALMS1Q8TCU4 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ALMS1Q8TCU4 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ALMS1Q8TCU4 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ALMS1Q8TCU4 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC15.03■□□□□ -0
ALMS1Q8TCU4 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC15.03■□□□□ -0
ALMS1Q8TCU4 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC15.03■□□□□ -0
ALMS1Q8TCU4 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC15.03■□□□□ -0
ALMS1Q8TCU4 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ALMS1Q8TCU4 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC15.03■□□□□ -0
ALMS1Q8TCU4 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC15.03■□□□□ -0
ALMS1Q8TCU4 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
ALMS1Q8TCU4 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
ALMS1Q8TCU4 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
ALMS1Q8TCU4 AC104187.1-201ENST00000607510 612 ntBASIC15.02■□□□□ -0
ALMS1Q8TCU4 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC15.02■□□□□ -0
ALMS1Q8TCU4 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC15.02■□□□□ -0
ALMS1Q8TCU4 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC15.02■□□□□ -0
ALMS1Q8TCU4 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms