Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLRN3Q8NCR9 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.55■□□□□ 0.4
CLRN3Q8NCR9 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC17.55■□□□□ 0.4
CLRN3Q8NCR9 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
CLRN3Q8NCR9 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC17.55■□□□□ 0.4
CLRN3Q8NCR9 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLRN3Q8NCR9 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLRN3Q8NCR9 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CLRN3Q8NCR9 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.55■□□□□ 0.4
CLRN3Q8NCR9 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLRN3Q8NCR9 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC17.55■□□□□ 0.4
CLRN3Q8NCR9 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLRN3Q8NCR9 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CLRN3Q8NCR9 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC17.53■□□□□ 0.4
CLRN3Q8NCR9 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CLRN3Q8NCR9 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.53■□□□□ 0.4
CLRN3Q8NCR9 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLRN3Q8NCR9 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLRN3Q8NCR9 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLRN3Q8NCR9 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLRN3Q8NCR9 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLRN3Q8NCR9 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLRN3Q8NCR9 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLRN3Q8NCR9 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CLRN3Q8NCR9 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLRN3Q8NCR9 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.52■□□□□ 0.4
CLRN3Q8NCR9 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CLRN3Q8NCR9 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLRN3Q8NCR9 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC17.52■□□□□ 0.4
CLRN3Q8NCR9 SUZ12P1-203ENST00000578195 985 ntBASIC17.52■□□□□ 0.4
CLRN3Q8NCR9 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC17.52■□□□□ 0.4
CLRN3Q8NCR9 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
CLRN3Q8NCR9 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CLRN3Q8NCR9 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CLRN3Q8NCR9 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLRN3Q8NCR9 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLRN3Q8NCR9 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
CLRN3Q8NCR9 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLRN3Q8NCR9 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.39
CLRN3Q8NCR9 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLRN3Q8NCR9 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CLRN3Q8NCR9 LINC01006-201ENST00000333319 2292 ntBASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 CHML-205ENST00000638160 705 ntTSL 3 BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 AL158211.5-201ENST00000623583 2518 ntBASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLRN3Q8NCR9 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLRN3Q8NCR9 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms