Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RNF165-205ENST00000588679 2904 ntBASIC20.36■□□□□ 0.85
DEPDC4Q8N2C3 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
DEPDC4Q8N2C3 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
DEPDC4Q8N2C3 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
DEPDC4Q8N2C3 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
DEPDC4Q8N2C3 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
DEPDC4Q8N2C3 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
DEPDC4Q8N2C3 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
DEPDC4Q8N2C3 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
DEPDC4Q8N2C3 AL137060.1-201ENST00000618151 2648 ntBASIC20.34■□□□□ 0.85
DEPDC4Q8N2C3 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
DEPDC4Q8N2C3 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
DEPDC4Q8N2C3 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
DEPDC4Q8N2C3 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.34■□□□□ 0.85
DEPDC4Q8N2C3 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.34■□□□□ 0.85
DEPDC4Q8N2C3 AC131212.1-201ENST00000613771 668 ntBASIC20.34■□□□□ 0.85
DEPDC4Q8N2C3 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
DEPDC4Q8N2C3 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
DEPDC4Q8N2C3 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.33■□□□□ 0.85
DEPDC4Q8N2C3 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.85
DEPDC4Q8N2C3 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
DEPDC4Q8N2C3 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
DEPDC4Q8N2C3 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.33■□□□□ 0.85
DEPDC4Q8N2C3 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
DEPDC4Q8N2C3 MIR4281-201ENST00000580852 62 ntBASIC20.33■□□□□ 0.85
DEPDC4Q8N2C3 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.33■□□□□ 0.85
DEPDC4Q8N2C3 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
DEPDC4Q8N2C3 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
DEPDC4Q8N2C3 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
DEPDC4Q8N2C3 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
DEPDC4Q8N2C3 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
DEPDC4Q8N2C3 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
DEPDC4Q8N2C3 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
DEPDC4Q8N2C3 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
DEPDC4Q8N2C3 AL356441.2-201ENST00000443009 864 ntBASIC20.31■□□□□ 0.84
DEPDC4Q8N2C3 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.31■□□□□ 0.84
DEPDC4Q8N2C3 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.31■□□□□ 0.84
DEPDC4Q8N2C3 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
DEPDC4Q8N2C3 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
DEPDC4Q8N2C3 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.3■□□□□ 0.84
DEPDC4Q8N2C3 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
DEPDC4Q8N2C3 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
DEPDC4Q8N2C3 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.3■□□□□ 0.84
DEPDC4Q8N2C3 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
DEPDC4Q8N2C3 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
DEPDC4Q8N2C3 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
DEPDC4Q8N2C3 AC021242.3-201ENST00000607598 1377 ntBASIC20.3■□□□□ 0.84
DEPDC4Q8N2C3 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
DEPDC4Q8N2C3 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
DEPDC4Q8N2C3 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
DEPDC4Q8N2C3 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms