Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
CCDC116Q8IYX3 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC116Q8IYX3 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC116Q8IYX3 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.71■□□□□ 0.91
CCDC116Q8IYX3 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC116Q8IYX3 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC116Q8IYX3 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC116Q8IYX3 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC116Q8IYX3 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC116Q8IYX3 GUSBP5-202ENST00000510805 1989 ntBASIC20.7■□□□□ 0.9
CCDC116Q8IYX3 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC116Q8IYX3 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC116Q8IYX3 AC133637.1-201ENST00000624115 1537 ntBASIC20.7■□□□□ 0.9
CCDC116Q8IYX3 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC116Q8IYX3 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC116Q8IYX3 AC092171.4-201ENST00000609130 632 ntBASIC20.7■□□□□ 0.9
CCDC116Q8IYX3 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC116Q8IYX3 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CCDC116Q8IYX3 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC116Q8IYX3 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC116Q8IYX3 AC087742.1-201ENST00000575880 1738 ntBASIC20.7■□□□□ 0.9
CCDC116Q8IYX3 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC116Q8IYX3 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC116Q8IYX3 MIR3181-201ENST00000578512 73 ntBASIC20.69■□□□□ 0.9
CCDC116Q8IYX3 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC116Q8IYX3 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC116Q8IYX3 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CCDC116Q8IYX3 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC116Q8IYX3 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CCDC116Q8IYX3 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC116Q8IYX3 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC116Q8IYX3 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC116Q8IYX3 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC116Q8IYX3 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC116Q8IYX3 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CCDC116Q8IYX3 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC116Q8IYX3 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC116Q8IYX3 AL136116.3-201ENST00000402907 1138 ntBASIC20.68■□□□□ 0.9
CCDC116Q8IYX3 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC116Q8IYX3 LINC01960-201ENST00000563759 1884 ntBASIC20.68■□□□□ 0.9
CCDC116Q8IYX3 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC116Q8IYX3 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC116Q8IYX3 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC116Q8IYX3 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC116Q8IYX3 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CCDC116Q8IYX3 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC116Q8IYX3 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC116Q8IYX3 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC116Q8IYX3 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC116Q8IYX3 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC116Q8IYX3 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC116Q8IYX3 SYT6-210ENST00000641643 1587 ntBASIC20.66■□□□□ 0.9
CCDC116Q8IYX3 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC116Q8IYX3 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC116Q8IYX3 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC116Q8IYX3 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC116Q8IYX3 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC116Q8IYX3 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CCDC116Q8IYX3 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 EP400NL-214ENST00000641289 2402 ntBASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CCDC116Q8IYX3 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC116Q8IYX3 AC127496.7-201ENST00000625110 1798 ntBASIC20.64■□□□□ 0.9
CCDC116Q8IYX3 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC116Q8IYX3 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
CCDC116Q8IYX3 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC116Q8IYX3 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC116Q8IYX3 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
CCDC116Q8IYX3 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC116Q8IYX3 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC116Q8IYX3 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.64■□□□□ 0.89
CCDC116Q8IYX3 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.64■□□□□ 0.89
CCDC116Q8IYX3 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
CCDC116Q8IYX3 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CCDC116Q8IYX3 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC116Q8IYX3 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC116Q8IYX3 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC116Q8IYX3 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC116Q8IYX3 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC116Q8IYX3 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC116Q8IYX3 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CCDC116Q8IYX3 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC116Q8IYX3 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC116Q8IYX3 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC116Q8IYX3 SERBP1P1-201ENST00000396021 1160 ntBASIC20.63■□□□□ 0.89
CCDC116Q8IYX3 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms