Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.39■□□□□ 0.69
SKA3Q8IX90 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SKA3Q8IX90 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.38■□□□□ 0.69
SKA3Q8IX90 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SKA3Q8IX90 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
SKA3Q8IX90 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
SKA3Q8IX90 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SKA3Q8IX90 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
SKA3Q8IX90 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SKA3Q8IX90 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
SKA3Q8IX90 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SKA3Q8IX90 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.38■□□□□ 0.69
SKA3Q8IX90 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SKA3Q8IX90 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.38■□□□□ 0.69
SKA3Q8IX90 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SKA3Q8IX90 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.38■□□□□ 0.69
SKA3Q8IX90 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.38■□□□□ 0.69
SKA3Q8IX90 AC133637.1-201ENST00000624115 1537 ntBASIC19.38■□□□□ 0.69
SKA3Q8IX90 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
SKA3Q8IX90 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SKA3Q8IX90 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SKA3Q8IX90 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SKA3Q8IX90 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.37■□□□□ 0.69
SKA3Q8IX90 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SKA3Q8IX90 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SKA3Q8IX90 UNC93B3-201ENST00000308076 687 ntBASIC19.37■□□□□ 0.69
SKA3Q8IX90 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.37■□□□□ 0.69
SKA3Q8IX90 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.37■□□□□ 0.69
SKA3Q8IX90 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SKA3Q8IX90 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.37■□□□□ 0.69
SKA3Q8IX90 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SKA3Q8IX90 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SKA3Q8IX90 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
SKA3Q8IX90 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SKA3Q8IX90 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.36■□□□□ 0.69
SKA3Q8IX90 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SKA3Q8IX90 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SKA3Q8IX90 AL138724.1-201ENST00000606771 1088 ntBASIC19.36■□□□□ 0.69
SKA3Q8IX90 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SKA3Q8IX90 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SKA3Q8IX90 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SKA3Q8IX90 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SKA3Q8IX90 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SKA3Q8IX90 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.35■□□□□ 0.69
SKA3Q8IX90 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA3Q8IX90 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SKA3Q8IX90 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SKA3Q8IX90 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA3Q8IX90 C1orf229-201ENST00000623686 2258 ntBASIC19.35■□□□□ 0.69
SKA3Q8IX90 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA3Q8IX90 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.35■□□□□ 0.69
SKA3Q8IX90 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA3Q8IX90 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA3Q8IX90 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SKA3Q8IX90 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA3Q8IX90 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.35■□□□□ 0.69
SKA3Q8IX90 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.35■□□□□ 0.69
SKA3Q8IX90 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA3Q8IX90 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA3Q8IX90 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.34■□□□□ 0.69
SKA3Q8IX90 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.34■□□□□ 0.69
SKA3Q8IX90 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
SKA3Q8IX90 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA3Q8IX90 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA3Q8IX90 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.34■□□□□ 0.69
SKA3Q8IX90 AC096631.2-201ENST00000436136 790 ntBASIC19.34■□□□□ 0.69
SKA3Q8IX90 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SKA3Q8IX90 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.34■□□□□ 0.69
SKA3Q8IX90 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
SKA3Q8IX90 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SKA3Q8IX90 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.34■□□□□ 0.69
SKA3Q8IX90 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.33■□□□□ 0.69
SKA3Q8IX90 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.33■□□□□ 0.69
SKA3Q8IX90 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SKA3Q8IX90 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SKA3Q8IX90 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SKA3Q8IX90 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.69
SKA3Q8IX90 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
SKA3Q8IX90 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SKA3Q8IX90 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
SKA3Q8IX90 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SKA3Q8IX90 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SKA3Q8IX90 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
SKA3Q8IX90 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
SKA3Q8IX90 AC011298.3-201ENST00000615796 283 ntBASIC19.33■□□□□ 0.68
SKA3Q8IX90 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SKA3Q8IX90 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
SKA3Q8IX90 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.33■□□□□ 0.68
SKA3Q8IX90 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SKA3Q8IX90 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
SKA3Q8IX90 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.33■□□□□ 0.68
SKA3Q8IX90 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SKA3Q8IX90 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SKA3Q8IX90 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SKA3Q8IX90 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SKA3Q8IX90 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SKA3Q8IX90 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SKA3Q8IX90 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.32■□□□□ 0.68
SKA3Q8IX90 AL136162.1-201ENST00000607711 1078 ntBASIC19.32■□□□□ 0.68
SKA3Q8IX90 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms