Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28AQ8IWP9 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28AQ8IWP9 ESRRAP2-201ENST00000418437 1549 ntBASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 AC092068.2-201ENST00000590491 1708 ntBASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28AQ8IWP9 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CCDC28AQ8IWP9 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC28AQ8IWP9 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC28AQ8IWP9 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC28AQ8IWP9 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC28AQ8IWP9 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC28AQ8IWP9 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC28AQ8IWP9 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC28AQ8IWP9 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC28AQ8IWP9 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.27■□□□□ 0.51
CCDC28AQ8IWP9 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC28AQ8IWP9 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CCDC28AQ8IWP9 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28AQ8IWP9 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28AQ8IWP9 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CCDC28AQ8IWP9 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28AQ8IWP9 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC28AQ8IWP9 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC28AQ8IWP9 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28AQ8IWP9 CHML-204ENST00000638121 920 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC28AQ8IWP9 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28AQ8IWP9 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC28AQ8IWP9 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CCDC28AQ8IWP9 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28AQ8IWP9 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CCDC28AQ8IWP9 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28AQ8IWP9 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.25■□□□□ 0.51
CCDC28AQ8IWP9 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28AQ8IWP9 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28AQ8IWP9 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC18.25■□□□□ 0.51
CCDC28AQ8IWP9 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC28AQ8IWP9 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28AQ8IWP9 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CCDC28AQ8IWP9 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28AQ8IWP9 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CCDC28AQ8IWP9 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28AQ8IWP9 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28AQ8IWP9 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28AQ8IWP9 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CCDC28AQ8IWP9 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28AQ8IWP9 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28AQ8IWP9 ZNRF2P2-203ENST00000454624 420 ntBASIC18.24■□□□□ 0.51
CCDC28AQ8IWP9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC28AQ8IWP9 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC28AQ8IWP9 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CCDC28AQ8IWP9 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28AQ8IWP9 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28AQ8IWP9 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28AQ8IWP9 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC18.23■□□□□ 0.51
CCDC28AQ8IWP9 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms