Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC13.83□□□□□ -0.2
LINC00643Q86TS7 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00643Q86TS7 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00643Q86TS7 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00643Q86TS7 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00643Q86TS7 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC13.83□□□□□ -0.2
LINC00643Q86TS7 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
LINC00643Q86TS7 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00643Q86TS7 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 HLA-L-211ENST00000482052 1765 ntBASIC13.8□□□□□ -0.2
LINC00643Q86TS7 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
LINC00643Q86TS7 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC13.79□□□□□ -0.2
LINC00643Q86TS7 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00643Q86TS7 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
LINC00643Q86TS7 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00643Q86TS7 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00643Q86TS7 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00643Q86TS7 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC13.79□□□□□ -0.2
LINC00643Q86TS7 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00643Q86TS7 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00643Q86TS7 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC13.79□□□□□ -0.2
LINC00643Q86TS7 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC13.79□□□□□ -0.2
LINC00643Q86TS7 AC080038.3-201ENST00000623346 1952 ntBASIC13.79□□□□□ -0.2
LINC00643Q86TS7 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC13.79□□□□□ -0.2
LINC00643Q86TS7 AC090340.1-201ENST00000620778 4980 ntBASIC13.79□□□□□ -0.2
LINC00643Q86TS7 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00643Q86TS7 LINC01006-201ENST00000333319 2292 ntBASIC13.79□□□□□ -0.2
LINC00643Q86TS7 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC13.79□□□□□ -0.2
LINC00643Q86TS7 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
LINC00643Q86TS7 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
LINC00643Q86TS7 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
LINC00643Q86TS7 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
LINC00643Q86TS7 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
LINC00643Q86TS7 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms