Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPUSD3Q6P087 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RPUSD3Q6P087 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPUSD3Q6P087 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.12■□□□□ 0.81
RPUSD3Q6P087 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPUSD3Q6P087 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RPUSD3Q6P087 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPUSD3Q6P087 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.11■□□□□ 0.81
RPUSD3Q6P087 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPUSD3Q6P087 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPUSD3Q6P087 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPUSD3Q6P087 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.11■□□□□ 0.81
RPUSD3Q6P087 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPUSD3Q6P087 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RPUSD3Q6P087 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.11■□□□□ 0.81
RPUSD3Q6P087 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.11■□□□□ 0.81
RPUSD3Q6P087 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.11■□□□□ 0.81
RPUSD3Q6P087 AC068587.7-201ENST00000641602 218 ntBASIC20.11■□□□□ 0.81
RPUSD3Q6P087 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPUSD3Q6P087 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
RPUSD3Q6P087 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPUSD3Q6P087 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RPUSD3Q6P087 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RPUSD3Q6P087 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.1■□□□□ 0.81
RPUSD3Q6P087 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
RPUSD3Q6P087 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RPUSD3Q6P087 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RPUSD3Q6P087 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
RPUSD3Q6P087 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
RPUSD3Q6P087 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RPUSD3Q6P087 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RPUSD3Q6P087 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RPUSD3Q6P087 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RPUSD3Q6P087 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.1■□□□□ 0.81
RPUSD3Q6P087 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RPUSD3Q6P087 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RPUSD3Q6P087 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
RPUSD3Q6P087 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.09■□□□□ 0.81
RPUSD3Q6P087 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.09■□□□□ 0.81
RPUSD3Q6P087 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.09■□□□□ 0.81
RPUSD3Q6P087 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
RPUSD3Q6P087 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.09■□□□□ 0.81
RPUSD3Q6P087 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.09■□□□□ 0.81
RPUSD3Q6P087 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.09■□□□□ 0.81
RPUSD3Q6P087 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RPUSD3Q6P087 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RPUSD3Q6P087 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RPUSD3Q6P087 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.09■□□□□ 0.81
RPUSD3Q6P087 LINC01124-201ENST00000409786 2117 ntBASIC20.08■□□□□ 0.81
RPUSD3Q6P087 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.08■□□□□ 0.81
RPUSD3Q6P087 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RPUSD3Q6P087 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RPUSD3Q6P087 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.08■□□□□ 0.81
RPUSD3Q6P087 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.08■□□□□ 0.81
RPUSD3Q6P087 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RPUSD3Q6P087 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RPUSD3Q6P087 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
RPUSD3Q6P087 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
RPUSD3Q6P087 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPUSD3Q6P087 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RPUSD3Q6P087 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPUSD3Q6P087 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPUSD3Q6P087 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPUSD3Q6P087 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
RPUSD3Q6P087 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RPUSD3Q6P087 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.07■□□□□ 0.8
RPUSD3Q6P087 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.07■□□□□ 0.8
RPUSD3Q6P087 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.07■□□□□ 0.8
RPUSD3Q6P087 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
RPUSD3Q6P087 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.07■□□□□ 0.8
RPUSD3Q6P087 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.07■□□□□ 0.8
RPUSD3Q6P087 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
RPUSD3Q6P087 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPUSD3Q6P087 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.06■□□□□ 0.8
RPUSD3Q6P087 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RPUSD3Q6P087 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPUSD3Q6P087 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.06■□□□□ 0.8
RPUSD3Q6P087 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.06■□□□□ 0.8
RPUSD3Q6P087 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.06■□□□□ 0.8
RPUSD3Q6P087 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPUSD3Q6P087 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPUSD3Q6P087 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
RPUSD3Q6P087 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
RPUSD3Q6P087 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.06■□□□□ 0.8
RPUSD3Q6P087 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
RPUSD3Q6P087 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPUSD3Q6P087 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPUSD3Q6P087 ID1-201ENST00000376105 1233 ntBASIC20.05■□□□□ 0.8
RPUSD3Q6P087 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RPUSD3Q6P087 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.05■□□□□ 0.8
RPUSD3Q6P087 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
RPUSD3Q6P087 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
RPUSD3Q6P087 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPUSD3Q6P087 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPUSD3Q6P087 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPUSD3Q6P087 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
RPUSD3Q6P087 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPUSD3Q6P087 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
RPUSD3Q6P087 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.04■□□□□ 0.8
RPUSD3Q6P087 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms