Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RNF220Q5VTB9 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
RNF220Q5VTB9 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.06■□□□□ 0.96
RNF220Q5VTB9 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.06■□□□□ 0.96
RNF220Q5VTB9 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.06■□□□□ 0.96
RNF220Q5VTB9 MIR4281-201ENST00000580852 62 ntBASIC21.06■□□□□ 0.96
RNF220Q5VTB9 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.06■□□□□ 0.96
RNF220Q5VTB9 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
RNF220Q5VTB9 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
RNF220Q5VTB9 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RNF220Q5VTB9 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RNF220Q5VTB9 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
RNF220Q5VTB9 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RNF220Q5VTB9 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RNF220Q5VTB9 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RNF220Q5VTB9 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.05■□□□□ 0.96
RNF220Q5VTB9 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RNF220Q5VTB9 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF220Q5VTB9 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.05■□□□□ 0.96
RNF220Q5VTB9 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.05■□□□□ 0.96
RNF220Q5VTB9 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF220Q5VTB9 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF220Q5VTB9 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF220Q5VTB9 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF220Q5VTB9 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF220Q5VTB9 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RNF220Q5VTB9 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
RNF220Q5VTB9 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
RNF220Q5VTB9 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
RNF220Q5VTB9 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RNF220Q5VTB9 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.04■□□□□ 0.96
RNF220Q5VTB9 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.04■□□□□ 0.96
RNF220Q5VTB9 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RNF220Q5VTB9 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
RNF220Q5VTB9 AL033527.3-201ENST00000566366 1196 ntBASIC21.04■□□□□ 0.96
RNF220Q5VTB9 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RNF220Q5VTB9 AF131216.4-201ENST00000638924 1588 ntBASIC21.04■□□□□ 0.96
RNF220Q5VTB9 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RNF220Q5VTB9 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RNF220Q5VTB9 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RNF220Q5VTB9 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 C11orf96-202ENST00000528572 1834 ntBASIC21.03■□□□□ 0.96
RNF220Q5VTB9 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RNF220Q5VTB9 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF220Q5VTB9 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
RNF220Q5VTB9 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF220Q5VTB9 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.02■□□□□ 0.96
RNF220Q5VTB9 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.02■□□□□ 0.96
RNF220Q5VTB9 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
RNF220Q5VTB9 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF220Q5VTB9 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
RNF220Q5VTB9 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RNF220Q5VTB9 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.02■□□□□ 0.95
RNF220Q5VTB9 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.02■□□□□ 0.95
RNF220Q5VTB9 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RNF220Q5VTB9 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
RNF220Q5VTB9 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.01■□□□□ 0.95
RNF220Q5VTB9 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RNF220Q5VTB9 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RNF220Q5VTB9 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
RNF220Q5VTB9 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RNF220Q5VTB9 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RNF220Q5VTB9 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RNF220Q5VTB9 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RNF220Q5VTB9 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
RNF220Q5VTB9 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RNF220Q5VTB9 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF220Q5VTB9 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
RNF220Q5VTB9 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21■□□□□ 0.95
RNF220Q5VTB9 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21■□□□□ 0.95
RNF220Q5VTB9 ALDH1A3-203ENST00000557963 1670 ntBASIC21■□□□□ 0.95
RNF220Q5VTB9 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF220Q5VTB9 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF220Q5VTB9 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21■□□□□ 0.95
RNF220Q5VTB9 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21■□□□□ 0.95
RNF220Q5VTB9 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
RNF220Q5VTB9 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF220Q5VTB9 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF220Q5VTB9 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
RNF220Q5VTB9 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RNF220Q5VTB9 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RNF220Q5VTB9 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
RNF220Q5VTB9 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RNF220Q5VTB9 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
RNF220Q5VTB9 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms